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Squashed 'modules/pmi/' changes from 498bd81adc..a4bb2ff865
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a4bb2ff865 PDB-Dev is now PDB-IHM
cc763452c5 Don't fail if conda is missing defaults channel

git-subtree-dir: modules/pmi
git-subtree-split: a4bb2ff8657b57709812a3bfbedff566f5efa74a
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benmwebb committed Dec 3, 2024
1 parent 416211c commit ace4b4e
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4 changes: 2 additions & 2 deletions modules/pmi/pyext/src/mmcif.py
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Expand Up @@ -2,7 +2,7 @@
@brief Support for the mmCIF file format.
IMP has basic support for writing out files in mmCIF format, for
deposition in [PDB-Dev](https://pdb-dev.wwpdb.org/).
deposition in [PDB-IHM](https://pdb-ihm.org/).
mmCIF files are currently generated by creating an
IMP.pmi.mmcif.ProtocolOutput class, and attaching it to an
IMP.pmi.representation.Representation object, after which any
Expand Down Expand Up @@ -1251,7 +1251,7 @@ class ProtocolOutput(IMP.pmi.output.ProtocolOutput):
"""Class to encode a modeling protocol as mmCIF.
IMP has basic support for writing out files in mmCIF format, for
deposition in [PDB-Dev](https://pdb-dev.wwpdb.org/).
deposition in [PDB-IHM](https://pdb-ihm.org/).
After creating an instance of this class, attach it to an
IMP.pmi.topology.System object. After this, any
generated models and metadata are automatically collected in the
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2 changes: 1 addition & 1 deletion modules/pmi/tools/setup_ci.sh
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Expand Up @@ -9,7 +9,7 @@ fi

python_version=$1

conda config --remove channels defaults # get conda-forge, not main, packages
conda config --remove channels defaults || : # get conda-forge, not main, packages
conda create --yes -q -n python${python_version} -c salilab -c conda-forge python=${python_version} pip scipy matplotlib imp-nightly libboost-devel gxx_linux-64 eigen cereal swig cmake
eval "$(conda shell.bash hook)"
conda activate python${python_version}
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