feat (data+sql): new foodb case

santanche · Sep 21, 2024 · aeb52ec · aeb52ec
1 parent e37ab90
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diff --git a/data/foodb/.gitignore b/data/foodb/.gitignore
@@ -0,0 +1 @@
+Content.csv
diff --git a/data/foodb/Compound.csv b/data/foodb/Compound.csv
diff --git a/data/foodb/Content.zip b/data/foodb/Content.zip
diff --git a/data/foodb/Food.csv b/data/foodb/Food.csv
diff --git a/data/foodb/Nutrient.csv b/data/foodb/Nutrient.csv
@@ -0,0 +1,40 @@
+id,legacy_id,type,public_id,name,export,state,annotation_quality,description,wikipedia_id,comments,dfc_id,duke_id,eafus_id,dfc_name,compound_source,metabolism,synthesis_citations,general_citations,creator_id,updater_id,created_at,updated_at
+1,10930,,FDBN00001,Fat,false,,low,,,,,FAT,,,DUKE,,,,,,2014-11-05 13:42:10 UTC,2014-11-05 13:42:10 UTC
+2,10946,,FDBN00002,Proteins,false,,low,,,,,PROTEIN|PROTEINS,,,DUKE,,,,,,2014-11-05 13:42:15 UTC,2014-11-05 13:42:15 UTC
+3,16037,,FDBN00003,Carbohydrate,false,,low,"Carbohydrates (or saccharides) are organic compounds with the empirical formula Cm(H2O)n. The carbohydrates  are divided into four chemical groupings: monosaccharides, disaccharides, oligosaccharides, and polysaccharides. The monosaccharides and disaccharides are commonly referred to as sugars. [Wikipedia]",Carbohydrate,,,CARBOHYDRATE|CARBOHYDRATES,,,DUKE,,,,,,2014-11-05 13:44:06 UTC,2014-11-05 13:44:06 UTC
+4,23404,,FDBN00004,Fatty acids,false,,low,,,,,FATTY-ACIDS,1335,,EAFUS,,,,,,2014-11-05 13:46:00 UTC,2014-11-05 13:46:00 UTC
+5,11134,,FDBN00005,Fiber (dietary),false,,low,,,,,FIBER(DIETARY),,,DUKE,,,,,,2014-11-05 13:47:36 UTC,2014-11-05 13:47:36 UTC
+6,58893,,FDBN00006,13:0,false,,low,,,,,,,,TABLES,,,,,,2014-11-05 13:49:16 UTC,2014-11-05 13:49:16 UTC
+7,58894,,FDBN00007,14:1,false,,low,,,,,,,,TABLES,,,,,,2014-11-05 13:49:19 UTC,2014-11-05 13:49:19 UTC
+8,58895,,FDBN00008,15:1,false,,low,,,,,,,,TABLES,,,,,,2014-11-05 13:49:38 UTC,2014-11-05 13:49:38 UTC
+9,58896,,FDBN00009,16:1 c,false,,low,,,,,,,,TABLES,,,,,,2014-11-05 13:49:52 UTC,2014-11-05 13:49:52 UTC
+10,58897,,FDBN00010,16:1 t,false,,low,,,,,,,,TABLES,,,,,,2014-11-05 13:49:59 UTC,2014-11-05 13:49:59 UTC
+11,58898,,FDBN00011,16:1 undifferentiated,false,,low,,,,,,,,TABLES,,,,,,2014-11-05 13:50:04 UTC,2014-11-05 13:50:04 UTC
+12,58899,,FDBN00012,17:1,false,,low,,,,,,,,TABLES,,,,,,2014-11-05 13:51:16 UTC,2014-11-05 13:51:16 UTC
+13,58900,,FDBN00013,18:1 c,false,,low,,,,,,,,TABLES,,,,,,2014-11-05 13:51:34 UTC,2014-11-05 13:51:34 UTC
+14,58901,,FDBN00014,18:1 t,false,,low,,,,,,,,TABLES,,,,,,2014-11-05 13:51:45 UTC,2014-11-05 13:51:45 UTC
+15,58902,,FDBN00015,18:1 undifferentiated,false,,low,,,,,,,,TABLES,,,,,,2014-11-05 13:51:57 UTC,2014-11-05 13:51:57 UTC
+16,58903,,FDBN00016,18:2 CLAs,false,,low,,,,,,,,TABLES,,,,,,2014-11-05 13:53:09 UTC,2014-11-05 13:53:09 UTC
+17,58904,,FDBN00017,18:2 i,false,,low,,,,,,,,TABLES,,,,,,2014-11-05 13:53:16 UTC,2014-11-05 13:53:16 UTC
+18,58905,,FDBN00018,18:2 t not further defined,false,,low,,,,,,,,TABLES,,,,,,2014-11-05 13:53:17 UTC,2014-11-05 13:53:17 UTC
+19,58906,,FDBN00019,"18:2 t,t",false,,low,,,,,,,,TABLES,,,,,,2014-11-05 13:53:23 UTC,2014-11-05 13:53:23 UTC
+20,58907,,FDBN00020,18:2 undifferentiated,false,,low,,,,,,,,TABLES,,,,,,2014-11-05 13:53:26 UTC,2014-11-05 13:53:26 UTC
+21,58908,,FDBN00021,18:3 undifferentiated,false,,low,,,,,,,,TABLES,,,,,,2014-11-05 13:54:38 UTC,2014-11-05 13:54:38 UTC
+22,58909,,FDBN00022,18:3i,false,,low,,,,,,,,TABLES,,,,,,2014-11-05 13:55:48 UTC,2014-11-05 13:55:48 UTC
+23,58910,,FDBN00023,18:4,false,,low,,,,,,,,TABLES,,,,,,2014-11-05 13:55:49 UTC,2014-11-05 13:55:49 UTC
+24,58911,,FDBN00024,20:1,false,,low,,,,,,,,TABLES,,,,,,2014-11-05 13:56:45 UTC,2014-11-05 13:56:45 UTC
+25,58912,,FDBN00025,"20:2 n-6 c,c",false,,low,,,,,,,,TABLES,,,,,,2014-11-05 13:57:50 UTC,2014-11-05 13:57:50 UTC
+26,58913,,FDBN00026,20:3 n-3,false,,low,,,,,,,,TABLES,,,,,,2014-11-05 13:58:07 UTC,2014-11-05 13:58:07 UTC
+27,58914,,FDBN00027,20:3 n-6,false,,low,,,,,,,,TABLES,,,,,,2014-11-05 13:58:11 UTC,2014-11-05 13:58:11 UTC
+28,58915,,FDBN00028,20:3 undifferentiated,false,,low,,,,,,,,TABLES,,,,,,2014-11-05 13:58:16 UTC,2014-11-05 13:58:16 UTC
+29,58916,,FDBN00029,20:4 undifferentiated,false,,low,,,,,,,,TABLES,,,,,,2014-11-05 13:58:33 UTC,2014-11-05 13:58:33 UTC
+30,58917,,FDBN00030,21:5,false,,low,,,,,,,,TABLES,,,,,,2014-11-05 13:59:36 UTC,2014-11-05 13:59:36 UTC
+31,58918,,FDBN00031,22:0,false,,low,,,,,,,,TABLES,,,,,,2014-11-05 13:59:37 UTC,2014-11-05 13:59:37 UTC
+32,58919,,FDBN00032,22:1 c,false,,low,,,,,,,,TABLES,,,,,,2014-11-05 14:00:03 UTC,2014-11-05 14:00:03 UTC
+33,58920,,FDBN00033,22:1 t,false,,low,,,,,,,,TABLES,,,,,,2014-11-05 14:00:09 UTC,2014-11-05 14:00:09 UTC
+34,58921,,FDBN00034,22:1 undifferentiated,false,,low,,,,,,,,TABLES,,,,,,2014-11-05 14:00:14 UTC,2014-11-05 14:00:14 UTC
+35,58922,,FDBN00035,22:4,false,,low,,,,,,,,TABLES,,,,,,2014-11-05 14:01:10 UTC,2014-11-05 14:01:10 UTC
+36,58923,,FDBN00036,22:5 n-3,false,,low,,,,,,,,TABLES,,,,,,2014-11-05 14:01:15 UTC,2014-11-05 14:01:15 UTC
+37,58924,,FDBN00037,24:1 c,false,,low,,,,,,,,TABLES,,,,,,2014-11-05 14:02:21 UTC,2014-11-05 14:02:21 UTC
+38,58928,,FDBN00038,Energy,false,,low,,,,,,,,TABLES,,,,,,2014-11-05 14:02:28 UTC,2014-11-05 14:02:28 UTC
+39,,,FDBN00039,Ash,false,,low,,,,,,,,TABLES,,,,,,2019-08-02 19:45:58 UTC,2019-08-02 19:45:58 UTC
diff --git a/data/foodb/mysql/.gitignore b/data/foodb/mysql/.gitignore
@@ -0,0 +1 @@
+docker-compose.yml
diff --git a/data/foodb/mysql/ativando-mysql.md b/data/foodb/mysql/ativando-mysql.md
@@ -0,0 +1,29 @@
+docker compose up
+docker exec -it docker-foodb-db-manager-1 bash
+
+mysql -u root -p foodb --local-infile
+password: root
+
+# Comentários
+O parâmetro `--local-infile` tem que constar na chamada (cliente) e tem que ser configurado internamente (servidor), para permitir importação de arquivos.
+
+O arquivo `my.conf` neste diretório deve ser copiado para o diretório `/etc/mysql/` dentro da imagem para permitir exportação:
+
+~~~
+docker cp ./my.cnf docker-foodb-db-manager-1:/etc/mysql/my.cnf
+~~~
+
+# Importação dentro do MySQL no Docker
+1. entrar no processo docker: `docker exec -it docker-foodb-db-manager-1 bash`
+2. entrar na pasta de importação `cd /import`
+3. criar o banco de dados
+~~~
+mysql -u root -p
+password: root
+CREATE DATABASE foodb;
+exit
+~~~
+4. chamada de importação (senha root):
+~~~
+mysql -p --local-infile foodb < foodb_server_dump_2020_4_21.sql > import-log.log
+~~~
diff --git a/data/foodb/mysql/docker-compose(model).yml b/data/foodb/mysql/docker-compose(model).yml
@@ -0,0 +1,33 @@
+services:
+  foodb-db-manager:
+    image: mysql:8.0.33
+    ports: 
+      - "3307:3306"
+    volumes:
+      - foodb-import:/import
+      - foodb-export:/export
+      - foodb-db:/var/lib/mysql
+    command: --default-authentication-plugin=mysql_native_password
+    restart: on-failure:5
+    environment:
+      MYSQL_ROOT_PASSWORD: root
+
+volumes:
+  foodb-import:
+    driver: "local"
+    driver_opts:
+      type: "none"
+      device: "/home/user/data/mysql/foodb/db-docker-mapped-folders/import"
+      o: "bind" 
+  foodb-export:
+    driver: "local"
+    driver_opts:
+      type: "none"
+      device: "/home/user/data/mysql/foodb/db-docker-mapped-folders/export"
+      o: "bind" 
+  foodb-db:
+    driver: "local"
+    driver_opts:
+      type: "none"
+      device: "/home/user/data/mysql/foodb/db-docker-mapped-folders/db"
+      o: "bind" 
diff --git a/data/foodb/mysql/my.cnf b/data/foodb/mysql/my.cnf
@@ -0,0 +1,2 @@
+[mysqld]
+secure-file-priv=""