colony-com

Diffusion model of a system where sender strains produce AHL in the presence of arabinose. AHL diffuses and activates GFP production in receiver strains. Orignal model inspired by Doong et. al. bioRxiv 2017: https://www.biorxiv.org/content/10.1101/220244v1

Name		Name	Last commit message	Last commit date
Latest commit History 54 Commits
Initial tests		Initial tests
__pycache__		__pycache__
examples		examples
.gitignore		.gitignore
AHL_detection_by_sender.py		AHL_detection_by_sender.py
AHL_production_detection.py		AHL_production_detection.py
Arabinose_directional_chemotaxis.py		Arabinose_directional_chemotaxis.py
Arabinose_general_induction.py		Arabinose_general_induction.py
Bacteria_nutrient.py		Bacteria_nutrient.py
Bacterial_groups_competition.py		Bacterial_groups_competition.py
Effect_of_AHL_production_rate.py		Effect_of_AHL_production_rate.py
Group_cohesion_leader_follower.py		Group_cohesion_leader_follower.py
Inducer_response_curves.py		Inducer_response_curves.py
LICENSE		LICENSE
Leader_follower.py		Leader_follower.py
README.md		README.md
Swarming.py		Swarming.py
Two_bacterial_groups.py		Two_bacterial_groups.py
function_demo.py		function_demo.py
functionsDiffusion.py		functionsDiffusion.py
helper_functions.py		helper_functions.py
mainDiffusion.py		mainDiffusion.py
plate.py		plate.py
species.py		species.py

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