Update tifffile to 2024.8.30 (#1190)

* Update tifffile and adapt example to breaking change. * Update changelog.
scalableminds · Sep 10, 2024 · 4969c51 · 4969c51
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diff --git a/webknossos/Changelog.md b/webknossos/Changelog.md
@@ -17,6 +17,7 @@ For upgrade instructions, please check the respective _Breaking Changes_ section
 ### Added
 
 ### Changed
+- Updated tifffile dependency to v2024.8.30. [#1190](https://github.com/scalableminds/webknossos-libs/pull/1190)
 
 ### Fixed
 

diff --git a/webknossos/examples/load_annotation_from_file.py b/webknossos/examples/load_annotation_from_file.py
@@ -19,13 +19,16 @@ def load_annotation(annotation_file: Path) -> None:
         mag_view = segmentation_layer.get_finest_mag()
         segments = mag_view.read(absolute_bounding_box=BOUNDING_BOX)
 
+        # Drop channel dimension as it has depth 1
+        segments = segments[0]
+
         # Write segmentation IDs to an OME Tiff file
         imwrite(
             "segmentation.ome.tiff",
             segments.T,  # note, the tiff lib use different channel order
             ome=True,
             metadata={
-                "axes": "ZYXC",
+                "axes": "ZYX",
             },
         )