v0.14.23

webknossos

Breaking Changes

• Preferring a custom tiff reader over the default PIMS reader to convert tiff files. This change enables the recognition of axis information and the support of tifffiles with more than 3 dimensions. However, it also leads to changed behavior when converting tiff files. Tiffs with axes other than c, x, y, and z, with a shape bigger than 1, are no longer supported for conversion to WKW. Please convert these files to Zarr or Zarr3 Datasets instead. #1043

Added

• Added a pixel level heuristic for distinguishing color and segmentation layers when importing image data with the from_images or add_layer_from_images method. #1007
• Added .ims as supported suffix. #1085
• Added suffixes supported by bioformats for Zeiss CZI, Leica LOF, Zeiss LSM (laser scanning microscope), Zeiss LSM (Laser Scanning Microscope) 510/710, Leica XLEF and Zeiss AxioVision ZVI (Zeiss Vision Image). #1086
• Added suport for setting a default ID mapping for segmentation layers. 1118

Changed

• Moved functional parts of merge volume annotation CLI to Dataset and Annotation classes. #1055
• Set a new max value for test_align_with_mag_against_numpy_implementation to avoid failures due to high numbers. #1082
• Updated dependabot.yml #1087
• Make lookup for supported suffixes case-insensitive. #1100

Fixed

• Fixed an issue with downloading annotations through the Command Line Interface. #1083