Some minor edits

docs/getting-started/getting-sourcecode.md

@@ -1,7 +1,7 @@
 SCHISM modeling system is mostly distributed via github. To download the source code it is good idea to have `git` installed in your system. If you have git, you can download the sourcecode with the following commands - 
 
 ```bash
-git clone https://github.com/schism-dev/schism.git
+git clone --recurse-submodules https://github.com/schism-dev/schism.git
 cd schism
 ```
 

sample_inputs/gotmturb.inp

@@ -93,8 +93,8 @@
 !                       (Craig & Banner (1994) use cw=100)
 ! compute_kappa    ->   compute von Karman constant from model parameters
 ! kappa            ->   the desired von Karman constant (if compute_kappa=.true.)
-! compute_c3       ->   compute c3 (E3 for Mellor-Yamada) for given Ri_st
-! Ri_st            ->   the desired steady-state Richardson number (if compute_c3=.true.)
+! compute_c3       ->   compute c3 (E3 for Mellor-Yamada) for given ri_st
+! ri_st            ->   the desired steady-state Richardson number (if compute_c3=.true.)
 ! length_lim       ->   apply length scale limitation (see Galperin et al. 1988)
 ! galp             ->   coef. for length scale limitation
 ! const_num        ->   minimum eddy diffusivity (only with turb_method=0)

src/Utility/Gen_Hotstart/gen_hot_from_hycom_0.f90

@@ -13,6 +13,8 @@
 !   limitations under the License.
 
 ! Generate hotstart.nc only (no *.th.nc) from gridded HYCOM data (nc file); works for global grid.
+! This script assumes gridded data is on structured grid (interp_mode=0).
+
 ! Changed algorithm from gen_hot_3Dth_from_hycom: no longer do
 ! horizontal extension but simply fill invalid pts with T,S values from a valid
 ! location (0 for SSH, U,V).

src/Utility/Pre-Processing/gen_tvd_WENO.f90

@@ -18,11 +18,12 @@
       integer, allocatable :: ic3(:,:),elside(:,:),isdel(:,:),isidenode(:,:)
       real*8, allocatable :: xnd(:),ynd(:),dp(:),area(:),xpoly(:),ypoly(:),xcj(:),ycj(:)
 
-      print*, 'Input transition depths (meters) for offshore (e.g., 30m)):'
+      print*, 'Input cut-off depth (meters) for offshore (e.g., 30m));'
+      print*, 'Upwind will be used shallower than this depth in offshore:'
       read*, hmin_of
 
-      print*, 'Input transition depths (meters) for nearshore (usually <hmin_of).'
-      print*, 'Upwind will be used shallower than this depth (e.g. same as h_tvd):'
+      print*, 'Input cut-off depth (meters) for nearshore.gr3 (usually <hmin_of; e.g. same as h_tvd).'
+      print*, 'Upwind will be used shallower than this depth in nearshore region:'
       read*, hmin_near
 !'