Create file article pmc

article/models.py

@@ -828,3 +828,43 @@ def generate_formats(cls, user, article):
             pmc.pipeline_pmc,
             indexed_check=False,
         )
+
+
+class ArticleStatusSubmission(Article):
+    class Meta:
+        proxy = True
+
+    panels = [
+        InlinePanel("article_pubmed_pmc"),
+        InlinePanel("article_pubmed"),
+    ]
+
+
+def article_directory_path_pubmed_pmc(instance, filename):
+    try:
+        return os.path.join(
+            *instance.article.sps_pkg_name.split("-"), instance.format_name, filename
+        )
+    except AttributeError:
+        return os.path.join(instance.article.pid_v3, instance.format_name, filename)
+
+
+class FileArticleFormatPubmedPmc(CommonControlField):
+    Article = ParentalKey(
+        Article,
+        null=True,
+        blank=True,
+        on_delete=models.SET_NULL,
+        related_name="article_pubmed_pmc",
+    )
+    file = models.FileField(
+        null=True,
+        blank=True,
+        verbose_name=_("File"),
+        upload_to=article_directory_path_pubmed_pmc,
+    )
+    status = models.CharField(
+        blank=True,
+        null=True,
+        max_length=5,
+    )

article/tasks.py

@@ -5,8 +5,10 @@
 from django.db.models import Q, Count
 from django.contrib.auth import get_user_model
 from django.utils.translation import gettext as _
+from packtools.sps.formats import pmc
 
-from article.models import Article, ArticleFormat
+
+from article.models import Article, ArticleFormat, Journal
 from article.sources import xmlsps
 from article.sources.preprint import harvest_preprints
 from config import celery_app
@@ -295,3 +297,8 @@ def remove_duplicate_articles(pid_v3=None):
 def remove_duplicate_articles_task(self, user_id=None, username=None, pid_v3=None):
     remove_duplicate_articles(pid_v3)
 
+@celery_app.task(bind=True)
+def create_files_articles_pubmed_pmc(self, user_id=None, username=None):
+    pipeline = pmc.pipeline_pmc
+    journals = Journal.objects.filter(Q(indexed_at__name="Pubmed") | Q(indexed_at__acronym="pmc"))
+    articles = Article.objects.filter(journal__in=journals)

journal/models.py

@@ -2446,9 +2446,9 @@ def create(
             obj = cls()
             obj.creator = user
             obj.journal = journal
-            obj.indexed_at = indexed_at or obj.indexed_at
-            obj.title = title or obj.title
-            obj.identifier = identifier or obj.identifier
+            obj.indexed_at = indexed_at 
+            obj.title = title 
+            obj.identifier = identifier
             obj.save()
             return obj
         except IntegrityError:

journal/sources/am_to_core.py

@@ -127,17 +127,21 @@ def update_panel_scope_and_about(
 def update_panel_interoperation(
     journal, indexed_at, secs_code, medline_code, medline_short_title, user
 ):
+    titles_in_db = []
     get_or_create_indexed_at(journal, indexed_at=indexed_at, user=user)
-
-    update_title_in_database(user=user, journal=journal, code=secs_code, acronym="secs")
-    update_title_in_database(
-        user=user,
-        journal=journal,
-        code=medline_code,
-        acronym="medline",
-        title=medline_short_title,
-    )
-
+    if secs_code:
+        obj = update_title_in_database(user=user, journal=journal, code=secs_code, acronym="secs")
+        titles_in_db.append(obj)
+    if medline_code:
+        obj = update_title_in_database(
+            user=user,
+            journal=journal,
+            code=medline_code,
+            acronym="medline",
+            title=medline_short_title,
+        )
+        titles_in_db.append(obj)
+    journal.title_in_database.set(titles_in_db)
 
 def update_panel_information(
     journal,
@@ -879,13 +883,13 @@ def update_title_in_database(user, journal, code, acronym, title=None):
         title = journal.title
     else:
         title = extract_value(title)
-    create_or_update_title_in_database(
+    return create_or_update_title_in_database(
         user=user, journal=journal, indexed_at=indexed_at, identifier=code, title=title
     )
 
 
 def create_or_update_title_in_database(user, journal, indexed_at, title, identifier):
-    TitleInDatabase.create_or_update(
+    return TitleInDatabase.create_or_update(
         user=user,
         journal=journal,
         indexed_at=indexed_at,