A package to load and cross-match targets of opportunity (ToO) for SDSS-V.
This package deals with all the aspects of loading and processing targets of opportunity. At a high level it:
- Reads one or multiple ToO input files.
- Loads new targets into
catalogdb.too_target
and updates the metadata of existing targets incatalogdb.too_metadata
. - Cross-matches the new targets, assigning
catalogids
to new targets and populating thecatalogdb.catalog_to_too_target
table. - Assigns new
sdss_id
to the newcatalogid
entries. (Potentially. TBD.) - Runs the
too
carton and updatestargetdb.target
,targetdb.carton_to_target
, andtargetdb.magnitude
for new ToOs. - Performs target validation.
- Generates a text file of active ToOs that can be synced to the observatories and is used by jaeger to replace targets on the fly when creating new configurations.
Target of opportunity files must be CSV or Parquet files with a table/dataframe that conforms to the following structure:
Column | Type | Description |
---|---|---|
too_id | int64 | Unique identifier for the ToO target. [required] |
fiber_type | string | Type of fiber to be used to observe the target (APOGEE or BOSS ). [required] |
catalogid | int64 | catalogid for this target, if already matched. |
sdss_id | int64 | sdss_id for this target, if already matched. |
gaia_dr3_source_id | int64 | Unique identifier of the target in the Gaia DR3 catalog (source_id column). |
twomass_pts_key | int32 | Unique identifier of the target in the 2MASS catalog (pts_key column). |
sky_brightness_mode | string | The sky brightness mode. Either bright or dark . [required] |
ra | float64 | The Right Ascension of the target in ICRS coordinates as decimal degrees. [required] |
dec | float64 | The declination of the target in ICRS coordinates as decimal degrees. [required] |
pmra | float32 | The proper motion in RA in mas/yr as a true angle (the cos(dec) factor must have been applied). |
pmdec | float32 | The proper motion in Dec in mas/yr as a true angle. |
epoch | float32 | The epoch of the ra /dec coordinates. Required when pmra /pmdec are defined. |
parallax | float32 | The parallax in mas . |
lambda_eff | float32 | The effective wavelength to calculate the atmospheric refraction correction for the target. |
u_mag | float32 | Sloan u' magnitude of the target. |
g_mag | float32 | Sloan g' magnitude of the target. |
r_mag | float32 | Sloan r' magnitude of the target. |
i_mag | float32 | Sloan i' magnitude of the target. |
z_mag | float32 | Sloan z' magnitude of the target. |
optical_prov | string | Source of the optical magnitudes. |
gaia_bp_mag | float32 | Gaia BP magnitude of the target. |
gaia_rp_mag | float32 | Gaia RP magnitude of the target. |
gaia_g_mag | float32 | Gaia G magnitude of the target. |
h_mag | float32 | H -band magnitude of the target. |
delta_ra | float32 | Fixed RA offset as a true angle, in arcsec. |
delta_dec | float32 | Fixed Dec offset, in arcsec. |
can_offset | boolean | true if the ToO is allowed to be offset. Offseting will only occur if target violates magnitude limits. [required] |
inertial | boolean | If true , the proper motions for this target will be ignored (equivalent to pmra = pmdec = 0.0 ). |
n_exposures | int16 | The minimum number of exposures required for the ToO to be complete and not assigned anymore. [required] |
priority | int16 | The relative prioriry of this target (10: highest, 1: lowest, 0: the target will be ignored) |
active | boolean | true if the target is active and should be assigned to configurations if possible. [required] |
observe_from_mjd | int32 | MJD from which the target is considered observable. Default to the current date. |
observe_until_mjd | int32 | MJD at which the target should automatically be consider inactive. If empty, the target never expires. |
observed | boolean | true if the target has been fully observed and should not be assigned again. [required] |
added_on | date | Date when the target was last added or modified, with the format YYYY-MM-DD. [required] |
The input file(s) must contain all the columns defined above with the correct data formats.
At least one magnitude is required for target validation. If one of the Sloan magnitude is provided, all the ugriz values must be provided. A sample, valid ToO file can be found here.
The too_id
must be unique across all targets of opportunity. The ingestion of new ToOs will fail if a ToO is found in the database with the same too_id
.
MJDs are understood of the MJD on which the night ends. For example, a target with observe_from_mjd=60422
will attempt to observ the target from the night in which MJD 60421 crosses into 60422.
A file can be validated by using the validate_too_targets
function, which will also fill nulls in some columns with default values.
from too import read_too_file, validate_too_targets
df = read_too_file('sample.csv')
validate_too_targets(df)
or via the CLI
too validate sample.csv
Note that too validate
expects the schema of the input file to exactly match that of the ToO datamodel (for example, if the file contains a too_id
column of type Int32
the validation will fail even if the values do not overflow int32). You can pass the flag --cast
to cast the columns to the correct types. This will fail if the input dataframe cannot be coerced to the correct types. When too
runs the entire pipeline, the input file is always cast, which can lead to some data precision loss.
For more details see this wiki page. To regenerate the table above, run
>>> from too.datamodel import datamodel_to_markdown
>>> datamodel_to_markdown()
| Column | Type | Description |
|---------------------|---------|--------------------------------------------------------------------------------------------------------|
| too_id | int64 | Unique identifier for the ToO target [required]. |
| fiber_type | string | Type of fiber to be used to observe the target [required]. |
...
When a new ToO file with the format described in the previous section is available, it can be loaded into the database using the CLI command
too process <FILE>
See too process --help
for more information on available options.
too process
will perform the following tasks:
- Read and validate the input file(s).
- Establish a connection to the database using the command flags as modifiers. Without additional flags
too
will try to connect to the databasesdss5db
on localhost with usersdss
. - Load new targets into the tables
catalogdb.too_target
andcatalogdb.too_metadata
. - Update data in
too_metadata
for existing targets. - Cross-match the new targets, creating entries in
catalogdb.catalog
andcatalogdb.catalog_to_too_target
. - Run the
too
carton.
To create a Parquet file with a list of ToOs that are active (ready to be observed, not expired, and not completed), use
too dump <FILE>
This command will create the Parquet file and add the bright neighbour and magnitude limit validation columns. The resulting file has the format required by jaeger to perform the replacement of science targets with ToOs.