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Merge pull request #36 from sebapersson/Update_doc_images
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Add codecov
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sebapersson authored Feb 9, 2024
2 parents 3f96875 + 78b1cbf commit 2d32b57
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5 changes: 4 additions & 1 deletion .github/workflows/CI.yml
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Expand Up @@ -19,7 +19,6 @@ jobs:
matrix:
version:
- '1.10'
- 'nightly'
os:
- ubuntu-latest
arch:
Expand All @@ -36,6 +35,10 @@ jobs:
- uses: julia-actions/julia-buildpkg@v1
- uses: julia-actions/julia-runtest@v1
continue-on-error: ${{ matrix.version == 'nightly' }}
- uses: julia-actions/julia-processcoverage@v1
- uses: codecov/codecov-action@v4
env:
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
docs:
name: Documentation
runs-on: ubuntu-latest
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1 change: 1 addition & 0 deletions README.md
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Expand Up @@ -5,6 +5,7 @@
[![Dev](https://img.shields.io/badge/docs-dev-blue.svg)](https://sebapersson.github.io/SBMLImporter.jl/dev/)
[![Build Status](https://github.com/sebapersson/SBMLImporter.jl/actions/workflows/CI.yml/badge.svg?branch=main)](https://github.com/sebapersson/SBMLImporter.jl/actions/workflows/CI.yml?query=branch%3Amain)
[![Aqua QA](https://raw.githubusercontent.com/JuliaTesting/Aqua.jl/master/badge.svg)](https://github.com/JuliaTesting/Aqua.jl)
[![codecov](https://codecov.io/gh/sebapersson/SBMLImporter.jl/graph/badge.svg?token=1J7RKUPZOM)](https://codecov.io/gh/sebapersson/SBMLImporter.jl)

SBMLImporter.jl is an importer for dynamic models defined in the [Systems Biology Markup Language (SBML)](https://sbml.org/). It supports most SBML features, such as events, dynamic compartment sizes, and rate, assignment, and algebraic rules. It imports models as a [Catalyst](https://github.com/SciML/Catalyst.jl) `ReactionSystem`, which can be converted into a `JumpProblem` for Gillespie simulations, a `SDEProblem` for Langevin SDE simulations, or an `ODEProblem` for deterministic simulations. For a detailed list of supported features, see below.

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