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# Sphinx build info version 1 | ||
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done. | ||
config: 77dcd679843833c561d92e09c896dedc | ||
tags: d77d1c0d9ca2f4c8421862c7c5a0d620 |
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[oneAPI] | ||
name=Intel(R) oneAPI repository | ||
baseurl=https://yum.repos.intel.com/oneapi | ||
enabled=1 | ||
gpgcheck=1 | ||
repo_gpgcheck=1 | ||
gpgkey=https://yum.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB |
18 changes: 18 additions & 0 deletions
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_downloads/358f8a6762fae43b5eed5dad1b72f08f/fk3.4-v20220730.patch
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diff --git a/Makefile b/Makefile | ||
index 5676245..11aac94 100644 | ||
--- a/Makefile | ||
+++ b/Makefile | ||
@@ -1,9 +1,10 @@ | ||
+FC=gfortran | ||
optimize=-O | ||
-FFLAGS=$(optimize) -ffpe-trap=overflow,invalid,denormal | ||
+FFLAGS=$(optimize) -ffpe-trap=overflow,invalid,denormal -ffixed-line-length-none | ||
CFLAGS=$(optimize) | ||
#if SAC library has been installed, uncomment the next two lines | ||
-#CFLAGS=$(optimize) -DSAC_LIB | ||
-#SACLIB=-L$(SACHOME)/lib -lsac -lsacio | ||
+CFLAGS=$(optimize) -DSAC_LIB | ||
+SACLIB=-L$(SACHOME)/lib -lsac -lsacio | ||
# | ||
|
||
SUBS = fft.o Complex.o sacio.o |
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# Anaconda/Miniconda | ||
|
||
- 本节贡献者: {{田冬冬}}(作者)、{{姚家园}}(审稿) | ||
- 最近更新时间:2023-09-23 | ||
|
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--- | ||
|
||
[Anaconda](https://www.anaconda.com/download/) 是一个跨平台的、用于科学计算的 Python 发行版, | ||
其提供了 Python、包管理器 `conda` 并内置了几百个科学计算相关的软件包。 | ||
[Miniconda](https://docs.conda.io/en/latest/miniconda.html) 可以看做是 | ||
Anaconda 的精简版,其只提供了 Python、包管理器 `conda` 以及相关的必须依赖包。 | ||
|
||
与 Anaconda 相比,Miniconda 安装包更小,安装速度更快,且安装后占用的硬盘空间更小。 | ||
Anaconda 内置的数百个软件包也都可以很容易通过 `conda` 安装。因而, | ||
**建议所有 Python 用户使用 Miniconda,而非 Linux 或 macOS 系统自带的 Python。** | ||
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## 安装 | ||
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1. 下载 Miniconda | ||
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根据自己使用的系统,从 [Miniconda 官方下载页面](https://docs.conda.io/en/latest/miniconda.html#latest-miniconda-installer-links) | ||
或 [清华大学 Miniconda 镜像](https://mirrors.tuna.tsinghua.edu.cn/anaconda/miniconda/) 下载对应的安装包。 | ||
|
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- Linux 64 位系统: | ||
[官方链接](https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh) | | ||
[清华镜像](https://mirrors.tuna.tsinghua.edu.cn/anaconda/miniconda/Miniconda3-latest-Linux-x86_64.sh) | ||
- Windows 64 位系统: | ||
[官方链接](https://repo.anaconda.com/miniconda/Miniconda3-latest-Windows-x86_64.exe) | | ||
[清华镜像](https://mirrors.tuna.tsinghua.edu.cn/anaconda/miniconda/Miniconda3-latest-Windows-x86_64.exe) | ||
- macOS (Intel 芯片): | ||
[官方链接](https://repo.anaconda.com/miniconda/Miniconda3-latest-MacOSX-x86_64.sh) | | ||
[清华镜像](https://mirrors.tuna.tsinghua.edu.cn/anaconda/miniconda/Miniconda3-latest-MacOSX-x86_64.sh) | ||
- macOS (M1 芯片): | ||
[官方链接](https://repo.anaconda.com/miniconda/Miniconda3-latest-MacOSX-arm64.sh) | ||
[清华镜像](https://mirrors.tuna.tsinghua.edu.cn/anaconda/miniconda/Miniconda3-latest-MacOSX-arm64.sh) | ||
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2. 安装 Miniconda | ||
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::::{tab-set} | ||
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:::{tab-item} Windows | ||
直接双击安装包即可安装。 | ||
::: | ||
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:::{tab-item} Linux | ||
``` | ||
$ bash Miniconda3-latest-Linux-x86_64.sh | ||
``` | ||
::: | ||
:::{tab-item} macOS | ||
``` | ||
# Intel 芯片 | ||
$ bash Miniconda3-latest-MacOSX-x86_64.sh | ||
# M1 芯片 | ||
$ bash Miniconda3-latest-MacOSX-arm64.sh | ||
``` | ||
::: | ||
:::: | ||
Miniconda 默认会安装到 {file}`${HOME}/miniconda3` 下,在安装过程中可以 | ||
设置为其他路径。 | ||
安装通常只需要十几秒,在安装的最后会出现: | ||
``` | ||
Do you wish the installer to initialize Miniconda3 by running conda init? [yes|no] | ||
[yes] >>> | ||
``` | ||
建议输入 `yes`,此时安装包会向当前 SHELL 的配置文件(如 {file}`~/.bashrc` | ||
或 {file}`~/.zshrc`)中写入 `conda` 初始化语句。 | ||
3. 测试安装 | ||
打开一个新的终端,在终端中输入 `python`,输出中看到 **Anaconda, Inc.** | ||
字样即代表安装完成: | ||
``` | ||
$ python | ||
Python 3.8.5 (default, Sep 4 2020, 02:22:02) | ||
[Clang 10.0.0 ] :: Anaconda, Inc. on darwin | ||
Type "help", "copyright", "credits" or "license" for more information. | ||
>>> | ||
``` | ||
# 配置 `conda` | ||
Anaconda/Miniconda 中提供的 `conda` 命令可以用于安装 Python 包、管理虚拟环境, | ||
此外,也可以使用 Python 自带的工具 `pip` 来安装 Python 包,其详细用法见 | ||
[pip 官方文档](https://pip.pypa.io/en/stable/)。我们建议尽可能使用 `conda` 来安装 Python 包, | ||
仅在 conda 没有提供需要的程序包时才使用 `pip` 来安装。 | ||
在使用 `conda` 前需要对 `conda` 做简单的配置。 | ||
[conda-forge](https://conda-forge.org/) 是一个由社区维护的大量 Python 包的通道。 | ||
为 conda 增加 conda-forge 通道,可以安装更多的软件包: | ||
``` | ||
$ conda config --add channels conda-forge | ||
``` | ||
设置通道优先级为 strict。当一个包同时位于 conda-forge 和 main 通道时,总是使用 conda-forge 提供的包, | ||
以避免混用 conda-forge 和 main 通道导致环境依赖关系解析变慢: | ||
``` | ||
$ conda config --set channel_priority true | ||
``` | ||
显示通道 URL,以更清楚地知道每个包是从哪个通道安装的: | ||
``` | ||
$ conda config --set show_channel_urls true | ||
``` | ||
配置使用国内清华源以加快软件包下载速度: | ||
``` | ||
$ conda config --add default_channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main | ||
$ conda config --set 'custom_channels.conda-forge' https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud | ||
``` | ||
设置 `conda` 使用更快的 libmamab solver: | ||
``` | ||
$ conda config --set solver libmamba | ||
``` | ||
## 使用 conda | ||
以下仅介绍一些 `conda` 的常用命令,其详细用法见 | ||
[conda 官方文档](https://docs.conda.io/projects/conda/en/latest/index.html)。 | ||
创建虚拟环境: | ||
``` | ||
# 虚拟环境名为 seismo-learn,初始 Python 版本与 base 环境相同 | ||
$ conda create --name seismo-learn | ||
``` | ||
激活虚拟环境: | ||
``` | ||
# 激活名为 seismo-learn 的虚拟环境 | ||
$ conda activate seismo-learn | ||
``` | ||
取消激活当前虚拟环境: | ||
``` | ||
$ conda deactivate | ||
``` | ||
:::{note} | ||
安装 Anaconda/Miniconda 后,打开终端默认会激活 base 环境。不经常使用 | ||
Python 的读者可以通过如下命令取消此默认设置: | ||
``` | ||
$ conda config --set auto_activate_base False | ||
``` | ||
取消后,可以临时激活 base 环境: | ||
``` | ||
$ conda activate base | ||
``` | ||
重新激活此默认设置: | ||
``` | ||
$ conda config --set auto_activate_base True | ||
``` | ||
::: | ||
搜索模块: | ||
``` | ||
$ conda search numpy | ||
``` | ||
安装模块: | ||
``` | ||
$ conda install numpy | ||
``` | ||
更新模块: | ||
``` | ||
$ conda update numpy | ||
``` | ||
使用 pip 安装模块: | ||
``` | ||
$ pip install numpy | ||
``` | ||
## 参考文档 | ||
- <https://docs.anaconda.com/anaconda/install/> | ||
- <https://conda.io/projects/conda/en/latest/user-guide/install/index.html> | ||
- <https://docs.conda.io/projects/conda/en/latest/user-guide/getting-started.html> | ||
- <https://mirrors.tuna.tsinghua.edu.cn/help/anaconda/> | ||
- <https://mirrors.tuna.tsinghua.edu.cn/help/pypi/> |
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# CPS | ||
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- 软件名称: Computer Programs in Seismology | ||
- 作者: [Robert B. Herrmann](https://www.eas.slu.edu/People/RBHerrmann/) | ||
- 主页: <http://www.eas.slu.edu/eqc/eqccps.html> | ||
- 官方文档: <http://www.eas.slu.edu/eqc/eqc_cps/CPS/CPS330.html> | ||
- 最新版本: v3.30 (2022-11-08) | ||
- 适用平台: {{Linux}} {{macOS}} {{Windows}} | ||
- 编程语言: Fortran、C | ||
- 许可协议: 未知 | ||
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--- | ||
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:::{note} | ||
CPS 在十几年前就发布了 3.30 版本,之后不断修复程序错误和更新代码,但并未更新版本号。 | ||
因而 CPS v3.30 实际上有多个不同的小版本。 | ||
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本教程仅在 Linux 和 macOS 系统下使用 v3.30 (2022-11-08) | ||
测试通过,其余版本或系统可能有所差异。 | ||
::: |
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# 安装 | ||
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- 本节贡献者: {{田冬冬}}(作者)、 {{姚家园}}(审稿) | ||
- 最近更新日期: 2021-01-26 | ||
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--- | ||
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{{ install_notes }} | ||
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1. 下载: | ||
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CPS 源码需要先填写申请表格才可以下载。 | ||
在 <http://www.eas.slu.edu/eqc/eqc_cps/CPS/cpslisc.html> 填写表格并提交。 | ||
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% CPS 的源码也可以直接 http://www.eas.slu.edu/eqc/eqc_cps/ 的 download 目录下载 | ||
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2. 解压: | ||
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``` | ||
$ tar -xvf NP330.Nov-08-2022.tgz | ||
``` | ||
将解压得到的 {file}`PROGRAMS.330` 文件夹移至 {file}`~/src/` 目录下,并重命名为 {file}`CPS` | ||
``` | ||
$ mkdir -p ~/src/ | ||
$ mv PROGRAMS.330 ~/src/CPS | ||
``` | ||
3. 安装依赖 | ||
::::{tab-set} | ||
:::{tab-item} Fedora | ||
``` | ||
$ sudo dnf install libX11-devel | ||
``` | ||
::: | ||
:::{tab-item} Ubuntu/Debian | ||
``` | ||
$ sudo apt install libx11-dev | ||
``` | ||
::: | ||
:::{tab-item} macOS | ||
``` | ||
# macOS 安装 XQuartz 后需要重启方可生效 | ||
$ brew install --cask xquartz | ||
``` | ||
:::: | ||
4. 配置: | ||
若使用的是 Linux 系统,首先需要确认当前系统是 32 还是 64 位。 | ||
终端键入 `uname -a`,若输出中包含 `x86_64` 则是 64 位,若输出包含类似 | ||
`i686` 则是 32 位。 | ||
进入源码目录: | ||
``` | ||
$ cd ~/src/CPS | ||
``` | ||
::::{tab-set} | ||
:::{tab-item} 64 位 Linux 系统 | ||
``` | ||
$ ./Setup LINUX6440 | ||
``` | ||
::: | ||
:::{tab-item} 32 位 Linux 系统 | ||
``` | ||
$ ./Setup LINUX40 | ||
``` | ||
::: | ||
:::{tab-item} macOS 系统 | ||
``` | ||
$ ./Setup OSX40 | ||
``` | ||
::: | ||
:::: | ||
:::{note} | ||
终端键入 `./Setup` 可查询全部选项。 | ||
::: | ||
5. 编译: | ||
``` | ||
$ ./C | ||
``` | ||
接下来会编译一段时间,最终在 bin 目录下应该生成一百多个可执行文件。 | ||
6. 修改环境变量,将 CPS 的 bin 路径添加到环境变量 **PATH** 中: | ||
``` | ||
$ echo 'export PATH=${HOME}/src/CPS/bin:${PATH}' >> ~/.bashrc | ||
$ source ~/.bashrc | ||
``` | ||
7. 检查安装是否成功 | ||
终端键入一些 CPS 的命令,比如 `sdisp96 -h`,若出现该命令的使用选项则表示安装成功。 |
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