Skip to content
@sgkit-dev

sgkit-dev

Popular repositories Loading

  1. sgkit sgkit Public

    Scalable genetics toolkit

    Python 241 32

  2. bio2zarr bio2zarr Public

    Convert bioinformatics file formats to Zarr

    Python 27 7

  3. vcf-zarr-spec vcf-zarr-spec Public

    VCF Zarr Specification

    12 2

  4. sgkit-requirements sgkit-requirements Public

    Repo for collecting requirements.

    Jupyter Notebook 6 1

  5. sgkit-publication sgkit-publication Public

    Sgkit publication repository

    TeX 5 5

  6. vcztools vcztools Public

    Partial reimplementation of bcftools for VCF Zarr

    Python 5 4

Repositories

Showing 10 of 14 repositories
  • vcf-zarr-publication Public

    Manuscript and associated scripts for vcf-zarr publication

    sgkit-dev/vcf-zarr-publication’s past year of commit activity
    Jupyter Notebook 2 8 13 0 Updated Dec 13, 2024
  • bio2zarr Public

    Convert bioinformatics file formats to Zarr

    sgkit-dev/bio2zarr’s past year of commit activity
    Python 27 Apache-2.0 7 26 (3 issues need help) 2 Updated Dec 4, 2024
  • vcztools Public

    Partial reimplementation of bcftools for VCF Zarr

    sgkit-dev/vcztools’s past year of commit activity
    Python 5 Apache-2.0 4 20 0 Updated Dec 3, 2024
  • sgkit Public

    Scalable genetics toolkit

    sgkit-dev/sgkit’s past year of commit activity
    Python 241 Apache-2.0 32 219 (2 issues need help) 9 Updated Nov 25, 2024
  • sgkit-benchmarks-asv Public
    sgkit-dev/sgkit-benchmarks-asv’s past year of commit activity
    JavaScript 0 1 0 0 Updated Nov 25, 2024
  • vcf-zarr-spec Public

    VCF Zarr Specification

    sgkit-dev/vcf-zarr-spec’s past year of commit activity
    12 Apache-2.0 2 23 0 Updated Jul 29, 2024
  • hypothesis-vcf Public

    Hypothesis strategy for generating VCF

    sgkit-dev/hypothesis-vcf’s past year of commit activity
    Python 1 Apache-2.0 0 0 0 Updated Jul 18, 2024
  • sgkit-publication Public

    Sgkit publication repository

    sgkit-dev/sgkit-publication’s past year of commit activity
    TeX 5 5 20 0 Updated Mar 6, 2024
  • sgkit-publication-backup Public Forked from sgkit-dev/sgkit-publication

    Backup of sgkit publication repository, original manubot version

    sgkit-dev/sgkit-publication-backup’s past year of commit activity
    HTML 0 5 0 0 Updated Feb 27, 2023
  • sgkit-bgen Public archive

    NOW ARCHIVED! BGEN IO implementations for sgkit. With https://github.com/pystatgen/sgkit/issues/65, now maintained and developed in the sgkit repo.

    sgkit-dev/sgkit-bgen’s past year of commit activity
    Python 0 Apache-2.0 3 12 0 Updated Oct 6, 2020
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…

Most used topics

Loading…