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1. binf binf Public

   A Python library for Bayesian inference. Easily stitch together your posterior from components and sample from it using Gibbs sampling and Hamiltonian Monte Carlo (HMC)!

   Python 1

2. rexfw rexfw Public

   A Python / MPI implementation of Replica Exchange (aka Parallel Tempering) which lets you run hundreds of replicas on a computing cluster.

   HTML 1 1

3. pandemic-sim pandemic-sim Public

   A toy infectious disease outbreak simulation

   Python 2 2

4. ensemble_hic ensemble_hic Public

   Code for the article "Bayesian inference of chromatin structure ensembles from population-averaged contact data" (PNAS, 2020)

   Python 5