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Added function Transform (Reduce Skewness)
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| Original file line number | Diff line number | Diff line change |
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| # This file is a generated template, your changes will not be overwritten | ||
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| jtTransformVarsClass <- if (requireNamespace('jmvcore', quietly=TRUE)) R6::R6Class( | ||
| "jtTransformVarsClass", | ||
| inherit = jtTransformVarsBase, | ||
| private = list( | ||
| .xfmDta = NULL, | ||
| .inpDta = NULL, | ||
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| .init = function() { | ||
| if (private$.chkVar()) { | ||
| private$.xfmDta <- do.call(jmvReadWrite::transform_vars_omv, private$.crrArg()) | ||
| # resize / prepare the output table (prpPvw in utils.R) | ||
| prpPvw(crrTbl = self$results$pvwDta, dtaFrm = private$.xfmDta, colFst = private$.colFst()) | ||
| } else { | ||
| # reset the output table (rstPvw in utils.R) | ||
| rstPvw(crrTbl = self$results$pvwDta) | ||
| } | ||
| }, | ||
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| .run = function() { | ||
| # check whether there are at least two variables in varOrd and that the data set has at least one row | ||
| if (private$.chkVar() && dim(self$data)[1] >= 1) { | ||
| # if “Create” was pressed (btnCrt == TRUE), open a new jamovi session with the data | ||
| if (self$options$btnCrt) { | ||
| do.call(jmvReadWrite::transform_vars_omv, private$.crrArg()[-2]) | ||
| # if not, show the variable list and how to use “Create” as general information | ||
| # and create a preview of the data (crtInf and fllPvw in utils.R) | ||
| } else { | ||
| crtInf(crrInf = self$results$genInf, dtaFrm = private$.xfmDta, hlpMsg = hlpCrt) | ||
| fllPvw(crrTbl = self$results$pvwDta, dtaFrm = private$.xfmDta) | ||
| } | ||
| } else { | ||
| # show getting started as general information (crtInf in utils.R) | ||
| crtInf(crrInf = self$results$genInf, hlpMsg = hlpXfV) | ||
| } | ||
| }, | ||
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| .chkVar = function() { | ||
| (length(self$options$posSqr) >= 1 || length(self$options$negSqr) >= 1 || | ||
| length(self$options$posLog) >= 1 || length(self$options$negLog) >= 1 || | ||
| length(self$options$posInv) >= 1 || length(self$options$negInv) >= 1) | ||
| }, | ||
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| .colFst = function() { | ||
| c(setdiff(names(private$.xfmDta), names(private$.inpDta)), names(private$.inpDta)) | ||
| }, | ||
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| .crrArg = function() { | ||
| if (!is.null(self$data) && dim(self$data)[1] > 0) private$.inpDta <- self$data else private$.inpDta <- self$readDataset() | ||
| crrXfm <- setNames(lapply(c("posSqr", "negSqr", "posLog", "negLog", "posInv", "negInv"), function(x) self$options[[x]]), | ||
| c("posSqr", "negSqr", "posLog", "negLog", "posInv", "negInv")) | ||
| list(dtaInp = private$.inpDta, fleOut = NULL, varXfm = crrXfm) | ||
| } | ||
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| ), | ||
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| public = list( | ||
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| asSource = function() { | ||
| if (private$.chkVar()) fmtSrc("jmvReadWrite::arrange_cols_omv", private$.crrArg()[c(-1, -2)]) | ||
| } | ||
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| ) | ||
| ) |
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,250 @@ | ||
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| # This file is automatically generated, you probably don't want to edit this | ||
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| jtTransformVarsOptions <- if (requireNamespace("jmvcore", quietly=TRUE)) R6::R6Class( | ||
| "jtTransformVarsOptions", | ||
| inherit = jmvcore::Options, | ||
| public = list( | ||
| initialize = function( | ||
| varAll = NULL, | ||
| posSqr = NULL, | ||
| negSqr = NULL, | ||
| posLog = NULL, | ||
| negLog = NULL, | ||
| posInv = NULL, | ||
| negInv = NULL, | ||
| btnCrt = FALSE, ...) { | ||
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| super$initialize( | ||
| package="jTransform", | ||
| name="jtTransformVars", | ||
| requiresData=TRUE, | ||
| ...) | ||
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| private$..varAll <- jmvcore::OptionVariables$new( | ||
| "varAll", | ||
| varAll, | ||
| hidden=TRUE, | ||
| permitted=list( | ||
| "numeric", | ||
| "factor", | ||
| "id"), | ||
| default=NULL) | ||
| private$..posSqr <- jmvcore::OptionVariables$new( | ||
| "posSqr", | ||
| posSqr, | ||
| suggested=list( | ||
| "continuous"), | ||
| permitted=list( | ||
| "numeric")) | ||
| private$..negSqr <- jmvcore::OptionVariables$new( | ||
| "negSqr", | ||
| negSqr, | ||
| suggested=list( | ||
| "continuous"), | ||
| permitted=list( | ||
| "numeric")) | ||
| private$..posLog <- jmvcore::OptionVariables$new( | ||
| "posLog", | ||
| posLog, | ||
| suggested=list( | ||
| "continuous"), | ||
| permitted=list( | ||
| "numeric")) | ||
| private$..negLog <- jmvcore::OptionVariables$new( | ||
| "negLog", | ||
| negLog, | ||
| suggested=list( | ||
| "continuous"), | ||
| permitted=list( | ||
| "numeric")) | ||
| private$..posInv <- jmvcore::OptionVariables$new( | ||
| "posInv", | ||
| posInv, | ||
| suggested=list( | ||
| "continuous"), | ||
| permitted=list( | ||
| "numeric")) | ||
| private$..negInv <- jmvcore::OptionVariables$new( | ||
| "negInv", | ||
| negInv, | ||
| suggested=list( | ||
| "continuous"), | ||
| permitted=list( | ||
| "numeric")) | ||
| private$..btnCrt <- jmvcore::OptionAction$new( | ||
| "btnCrt", | ||
| btnCrt, | ||
| default=FALSE) | ||
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| self$.addOption(private$..varAll) | ||
| self$.addOption(private$..posSqr) | ||
| self$.addOption(private$..negSqr) | ||
| self$.addOption(private$..posLog) | ||
| self$.addOption(private$..negLog) | ||
| self$.addOption(private$..posInv) | ||
| self$.addOption(private$..negInv) | ||
| self$.addOption(private$..btnCrt) | ||
| }), | ||
| active = list( | ||
| varAll = function() private$..varAll$value, | ||
| posSqr = function() private$..posSqr$value, | ||
| negSqr = function() private$..negSqr$value, | ||
| posLog = function() private$..posLog$value, | ||
| negLog = function() private$..negLog$value, | ||
| posInv = function() private$..posInv$value, | ||
| negInv = function() private$..negInv$value, | ||
| btnCrt = function() private$..btnCrt$value), | ||
| private = list( | ||
| ..varAll = NA, | ||
| ..posSqr = NA, | ||
| ..negSqr = NA, | ||
| ..posLog = NA, | ||
| ..negLog = NA, | ||
| ..posInv = NA, | ||
| ..negInv = NA, | ||
| ..btnCrt = NA) | ||
| ) | ||
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| jtTransformVarsResults <- if (requireNamespace("jmvcore", quietly=TRUE)) R6::R6Class( | ||
| "jtTransformVarsResults", | ||
| inherit = jmvcore::Group, | ||
| active = list( | ||
| genInf = function() private$.items[["genInf"]], | ||
| pvwDta = function() private$.items[["pvwDta"]]), | ||
| private = list(), | ||
| public=list( | ||
| initialize=function(options) { | ||
| super$initialize( | ||
| options=options, | ||
| name="", | ||
| title="Transform (Reduce Skewness)") | ||
| self$add(jmvcore::Html$new( | ||
| options=options, | ||
| name="genInf", | ||
| clearWith=list( | ||
| "varOrd", | ||
| "blnAll", | ||
| "btnCrt"))) | ||
| self$add(jmvcore::Table$new( | ||
| options=options, | ||
| name="pvwDta", | ||
| title="Data Preview", | ||
| refs=list( | ||
| "jTransform", | ||
| "jmvReadWrite"), | ||
| clearWith=list( | ||
| "varOrd", | ||
| "blnAll"), | ||
| rows=1, | ||
| columns=list( | ||
| list( | ||
| `name`="fstCol", | ||
| `title`=""))))})) | ||
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| jtTransformVarsBase <- if (requireNamespace("jmvcore", quietly=TRUE)) R6::R6Class( | ||
| "jtTransformVarsBase", | ||
| inherit = jmvcore::Analysis, | ||
| public = list( | ||
| initialize = function(options, data=NULL, datasetId="", analysisId="", revision=0) { | ||
| super$initialize( | ||
| package = "jTransform", | ||
| name = "jtTransformVars", | ||
| version = c(1,0,0), | ||
| options = options, | ||
| results = jtTransformVarsResults$new(options=options), | ||
| data = data, | ||
| datasetId = datasetId, | ||
| analysisId = analysisId, | ||
| revision = revision, | ||
| pause = NULL, | ||
| completeWhenFilled = TRUE, | ||
| requiresMissings = FALSE, | ||
| weightsSupport = 'auto') | ||
| })) | ||
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| #' Transform (Reduce Skewness) | ||
| #' | ||
| #' Create New (Computed) Variables, Aiming At Reducing Deviations From A | ||
| #' Normal Distribution | ||
| #' | ||
| #' @examples | ||
| #' \donttest{ | ||
| #' # the function is a wrapper for jmvReadWrite::transform_vars_omv | ||
| #' # please use that function when in R (or in Rj) | ||
| #' # for more information: https://sjentsch.github.io/jmvReadWrite | ||
| #'} | ||
| #' @param data . | ||
| #' @param varAll . | ||
| #' @param posSqr . | ||
| #' @param negSqr . | ||
| #' @param posLog . | ||
| #' @param negLog . | ||
| #' @param posInv . | ||
| #' @param negInv . | ||
| #' @param btnCrt . | ||
| #' @return A results object containing: | ||
| #' \tabular{llllll}{ | ||
| #' \code{results$genInf} \tab \tab \tab \tab \tab a html \cr | ||
| #' \code{results$pvwDta} \tab \tab \tab \tab \tab a table \cr | ||
| #' } | ||
| #' | ||
| #' Tables can be converted to data frames with \code{asDF} or \code{\link{as.data.frame}}. For example: | ||
| #' | ||
| #' \code{results$pvwDta$asDF} | ||
| #' | ||
| #' \code{as.data.frame(results$pvwDta)} | ||
| #' | ||
| #' @export | ||
| jtTransformVars <- function( | ||
| data, | ||
| varAll = NULL, | ||
| posSqr, | ||
| negSqr, | ||
| posLog, | ||
| negLog, | ||
| posInv, | ||
| negInv, | ||
| btnCrt = FALSE) { | ||
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| if ( ! requireNamespace("jmvcore", quietly=TRUE)) | ||
| stop("jtTransformVars requires jmvcore to be installed (restart may be required)") | ||
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| if ( ! missing(varAll)) varAll <- jmvcore::resolveQuo(jmvcore::enquo(varAll)) | ||
| if ( ! missing(posSqr)) posSqr <- jmvcore::resolveQuo(jmvcore::enquo(posSqr)) | ||
| if ( ! missing(negSqr)) negSqr <- jmvcore::resolveQuo(jmvcore::enquo(negSqr)) | ||
| if ( ! missing(posLog)) posLog <- jmvcore::resolveQuo(jmvcore::enquo(posLog)) | ||
| if ( ! missing(negLog)) negLog <- jmvcore::resolveQuo(jmvcore::enquo(negLog)) | ||
| if ( ! missing(posInv)) posInv <- jmvcore::resolveQuo(jmvcore::enquo(posInv)) | ||
| if ( ! missing(negInv)) negInv <- jmvcore::resolveQuo(jmvcore::enquo(negInv)) | ||
| if (missing(data)) | ||
| data <- jmvcore::marshalData( | ||
| parent.frame(), | ||
| `if`( ! missing(varAll), varAll, NULL), | ||
| `if`( ! missing(posSqr), posSqr, NULL), | ||
| `if`( ! missing(negSqr), negSqr, NULL), | ||
| `if`( ! missing(posLog), posLog, NULL), | ||
| `if`( ! missing(negLog), negLog, NULL), | ||
| `if`( ! missing(posInv), posInv, NULL), | ||
| `if`( ! missing(negInv), negInv, NULL)) | ||
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| options <- jtTransformVarsOptions$new( | ||
| varAll = varAll, | ||
| posSqr = posSqr, | ||
| negSqr = negSqr, | ||
| posLog = posLog, | ||
| negLog = negLog, | ||
| posInv = posInv, | ||
| negInv = negInv, | ||
| btnCrt = btnCrt) | ||
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| analysis <- jtTransformVarsClass$new( | ||
| options = options, | ||
| data = data) | ||
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| analysis$run() | ||
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| analysis$results | ||
| } | ||
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