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implement section and action, fix labels
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@nr23730
nr23730 committed Feb 27, 2024
1 parent 1b94a10 commit f4129bf
Showing 1 changed file with 41 additions and 30 deletions.
71 changes: 41 additions & 30 deletions src/main/java/de/uksh/medic/etl/openehrmapper/Generator.java
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Original file line number Diff line number Diff line change
Expand Up @@ -7,6 +7,7 @@
import com.nedap.archie.rm.composition.ContentItem;
import com.nedap.archie.rm.composition.Evaluation;
import com.nedap.archie.rm.composition.Instruction;
import com.nedap.archie.rm.composition.IsmTransition;
import com.nedap.archie.rm.composition.Observation;
import com.nedap.archie.rm.composition.Section;
import com.nedap.archie.rm.datastructures.Cluster;
Expand Down Expand Up @@ -63,7 +64,7 @@ private void generateCache() {
public static void processAttributeChildren(String path, String name, Object jsonmap,
Map<String, Object> map) {
String newPath = path + "/children";
if (!CACHE_NODE_LIST.containsKey(path + "/rm_type_name")) {
if (!CACHE_NODE_LIST.containsKey(newPath + "/rm_type_name")) {
XPathExpression expr;
try {
expr = XP.compile(newPath + "/rm_type_name");
Expand Down Expand Up @@ -98,22 +99,21 @@ public static void processAttributeChildren(String path, String name, Object jso
// Navigation Class descriptions
// https://specifications.openehr.org/releases/RM/latest/ehr.html#_class_descriptions_4

@SuppressWarnings("unchecked")
public static void gen_SECTION(String path, String name, Object jsonmap, Map<String, Object> map)
throws Exception {
String nodeId = getNodeId(path);
String label = getTypeLabel(path, nodeId);
// String newPath = path + "/attributes";
String paramName = getArcheTypeId(path);
String label = getTypeLabel(path, getNodeId(path));
String newPath = path + "/attributes";
Section section = new Section();
section.setArchetypeNodeId(nodeId);
section.setArchetypeNodeId(paramName);

section.setNameAsString(label);
List<ContentItem> items = new ArrayList<>();
processAttributeChildren(newPath, paramName, items, (Map<String, Object>) map.get(paramName));
section.setItems(items);

// events.setTime(new DvDateTime((String) map.get("events_time")));
// ItemTree itemTree = new ItemTree();
// processAttributeChildren(path, nodeId, itemTree, map);
// section.setItems(itemTree);

// ((History<ItemStructure>) jsonmap).addEvent(events);
((List<ContentItem>) jsonmap).add(section);
}

// Entry Class descriptions
Expand Down Expand Up @@ -224,34 +224,46 @@ public static void gen_ACTIVITY(String path, String name, Object jsonmap, Map<St
Activity activity = new Activity();
activity.setActionArchetypeId("openEHR-EHR-INSTRUCTION.service_request.v1");
activity.setArchetypeNodeId(nodeId);
activity.setNameAsString(getLabel(getNodeId(path), nodeId));
activity.setNameAsString(getLabel(nodeId, name));

if (map.containsKey(nodeId)) {
ItemTree itemTree = new ItemTree();
processAttributeChildren(oap, nodeId, itemTree, (Map<String, Object>) map.get(nodeId));
processAttributeChildren(oap, name, itemTree, (Map<String, Object>) map.get(nodeId));
activity.setDescription(itemTree);
if (oa) {
((ArrayList<Activity>) jsonmap).add(activity);
}
}
}

@SuppressWarnings("unchecked")
public static void gen_ACTION(String path, String name, Object jsonmap, Map<String, Object> map)
throws Exception {
String nodeId = getNodeId(path);
String label = getTypeLabel(path, nodeId);
// String newPath = path + "/attributes";
Action action = new Action();
action.setArchetypeNodeId(nodeId);

action.setNameAsString(label);
String paramName = getArcheTypeId(path);
String oap = path + "/attributes[rm_attribute_name=\"description\"]";
Boolean oa = (Boolean) XP.evaluate(oap, opt, XPathConstants.BOOLEAN);

// events.setTime(new DvDateTime((String) map.get("events_time")));
// ItemTree itemTree = new ItemTree();
// processAttributeChildren(path, nodeId, itemTree, map);
// section.setItems(itemTree);
Action action = new Action();
action.setArchetypeDetails(new Archetyped(new ArchetypeID(paramName), "1.1.0"));
action.setArchetypeNodeId(paramName);
action.setNameAsString(getLabel(getNodeId(path), paramName));
action.setLanguage(new CodePhrase(new TerminologyId("ISO_639-1"), "de"));
action.setEncoding(new CodePhrase(new TerminologyId("IANA_character-sets"), "UTF-8"));
action.setSubject(new PartySelf());

// ((History<ItemStructure>) jsonmap).addEvent(events);
if (map.containsKey(paramName)) {
action.setTime(new DvDateTime(((Map<String, List<String>>) map.get(paramName)).get("time").get(0)));
ItemTree itemTree = new ItemTree();
processAttributeChildren(oap, paramName, itemTree, (Map<String, Object>) map.get(paramName));
action.setDescription(itemTree);
IsmTransition ism = new IsmTransition();
ism.setCurrentState(
new DvCodedText("completed", new CodePhrase(new TerminologyId("openehr"), "532", "completed")));
action.setIsmTransition(ism);
if (oa) {
((ArrayList<ContentItem>) jsonmap).add(action);
}
}
}

// INSTRUCTION_DETAILS
Expand All @@ -274,7 +286,6 @@ public static void gen_ITEM_TREE(String path, String name, Object jsonmap, Map<S
CACHE.put(path + "/../rm_attribute_name", (String) expr.evaluate(opt, XPathConstants.STRING));
}
String attributeName = CACHE.get(path + "/../rm_attribute_name");
String archeTypeId = getArcheTypeId(path + "/../../../../../..");
String nodeId = getNodeId(path);
String newPath = path + "/attributes";
if ("".equals(attributeName)) {
Expand All @@ -286,7 +297,7 @@ public static void gen_ITEM_TREE(String path, String name, Object jsonmap, Map<S
itemTree.setNameAsString("data"); // fix name
ArrayList<Item> items = new ArrayList<Item>();
itemTree.setItems(items);
processAttributeChildren(newPath, archeTypeId, items, map);
processAttributeChildren(newPath, name, items, map);
}

// Representation Class descriptions
Expand Down Expand Up @@ -316,7 +327,7 @@ public static void gen_CLUSTER(String path, String name, Object jsonmap,
cluster.setArchetypeNodeId(aNodeId);
cluster.setNameAsString(label);
ArrayList<Item> items = new ArrayList<Item>();
Generator.processAttributeChildren(newPath, paramName, items, (Map<String, Object>) map.get(code));
processAttributeChildren(newPath, paramName, items, (Map<String, Object>) map.get(code));
cluster.setItems(items);
((ArrayList<Object>) jsonmap).add(cluster);
}
Expand Down Expand Up @@ -513,8 +524,8 @@ public static void gen_DV_URI(String path, String name, Object jsonmap,
// XPath Query functions

private static String getLabel(String code, String archetype) throws Exception {
String path = "/template/definition/attributes[rm_attribute_name=\"content\"]//children[archetype_id/value=\""
+ archetype + "\"]/term_definitions[@code=\"" + code + "\"]/items[@id=\"text\"]";
String path = "//archetype_id[value=\"" + archetype + "\"]/../term_definitions[@code=\"" + code
+ "\"]/items[@id=\"text\"]/text()";
if (!CACHE.containsKey(path)) {
XPathExpression expr = XP.compile(path);
CACHE.put(path, (String) expr.evaluate(opt, XPathConstants.STRING));
Expand Down

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