ROP input details

ROP accepts : .fastq, '.fastq', and .bam. Input can be in gzip format : .fastq.gz and .fasta.gz

To run ROP for .fastq.gz input use --gzip option as follows:

python rop.py --fastqGz example/unmappedExample.fastq.gz test

TO run ROP for .fasta.gz skipping STEP1-2 use --gzip and --skipPreliminary options as follows:

python rop.py --gzip --skipPreliminary example/unmappedExampleFasta.fasta.gz testNew1/