Changing the github actions workflow to test integration with MetaMorpheus #1169
Workflow file for this run
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| name: Build and Test | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| jobs: | |
| #build: | |
| # runs-on: windows-latest | |
| # timeout-minutes: 15 | |
| # steps: | |
| # - uses: actions/checkout@v2 | |
| # - name: Set up .NET | |
| # uses: actions/setup-dotnet@v1 | |
| # with: | |
| # dotnet-version: 8.0.x | |
| # - name: Restore dependencies | |
| # run: cd mzLib && dotnet restore | |
| # - name: Build | |
| # run: cd mzLib && dotnet build --no-restore | |
| # - name: Build (Test) | |
| # run: cd mzLib && dotnet build --no-restore ./Test/Test.csproj | |
| # - name: Build (TestFlashLFQ) | |
| # run: cd mzLib && dotnet build --no-restore ./TestFlashLFQ/TestFlashLFQ.csproj | |
| # - name: Add coverlet collector (Test) | |
| # run: cd mzLib && dotnet add Test/Test.csproj package coverlet.collector -v 6.0.2 | |
| # - name: Add coverlet collector (TestFlashLFQ) | |
| # run: cd mzLib && dotnet add TestFlashLFQ/TestFlashLFQ.csproj package coverlet.collector -v 6.0.2 | |
| # - name: Test | |
| # run: cd mzLib && dotnet test --no-build --verbosity normal --collect:"XPlat Code Coverage" /p:CoverletOutputFormat=cobertura ./Test/Test.csproj | |
| # - name: TestFlashLFQ | |
| # run: cd mzLib && dotnet test --no-build --verbosity normal --collect:"XPlat Code Coverage" /p:CoverletOutputFormat=cobertura ./TestFlashLFQ/TestFlashLFQ.csproj | |
| # - name: Upload coverage to Codecov | |
| # uses: codecov/codecov-action@v4 | |
| # env: | |
| # CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| # verbose: true | |
| # files: mzLib/Test*/TestResults/*/coverage.cobertura.xml | |
| package: | |
| runs-on: windows-latest | |
| timeout-minutes: 15 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up .NET | |
| uses: actions/setup-dotnet@v1 | |
| with: | |
| dotnet-version: 8.0.x | |
| - name: Restore dependencies | |
| run: cd mzLib && dotnet restore | |
| - name: Build | |
| run: cd mzLib && dotnet build --no-restore --configuration Release | |
| - name: Change mzLib version, pack, add source | |
| run: | | |
| cd mzLib; | |
| (Get-Content mzLib.nuspec) -replace "\<version\>(.*)\</version\>", "<version>9.9.9</version>" | Set-Content mzLib.nuspec; | |
| $mzlibMatch = Select-String -Path mzLib.nuspec -Pattern "(?<=\<version\>)(.*)(?=\</version)"; | |
| $mzlibVersion = $mzlibMatch.Matches[0].Value; | |
| echo "mzLib version number changed to: $mzlibVersion"; | |
| nuget pack; | |
| dotnet nuget add source ./; | |
| - name: Clone MetaMorpheus | |
| uses: actions/checkout@master | |
| with: | |
| path: ./MetaMorpheus | |
| repository: smith-chem-wisc/MetaMorpheus | |
| ref: master | |
| - name: Change MetaMorpheus mzLib version and restore | |
| run: | | |
| cd ./MetaMorpheus/MetaMorpheus; | |
| dotnet remove CMD package mzLib; | |
| dotnet add CMD package mzLib -v 9.9.9; | |
| dotnet remove GUI package mzLib; | |
| dotnet add GUI package mzLib -v 9.9.9; | |
| dotnet remove GuiFunctions package mzLib; | |
| dotnet add GuiFunctions package mzLib -v 9.9.9; | |
| dotnet remove EngineLayer package mzLib; | |
| dotnet add EngineLayer package mzLib -v 9.9.9; | |
| dotnet remove Test package mzLib; | |
| dotnet add Test package mzLib -v 9.9.9; | |
| dotnet remove TaskLayer package mzLib; | |
| dotnet add TaskLayer package mzLib -v 9.9.9; | |
| dotnet restore; | |
| # - name: Delete mzLib, replace with local | |
| # run: | | |
| # cd mzLib; | |
| # $mzlibMatch = Select-String -Path mzLib.nuspec -Pattern "(?<=\<version\>)(.*)(?=\</version)"; | |
| # $mzlibVersion = $mzlibMatch.Matches[0].Value; | |
| # echo "mzLib version: $mzlibVersion"; | |
| # cd ../MetaMorpheus/MetaMorpheus; | |
| # dotnet add CMD package mzLib -v $mzlibVersion -s ../../packages; | |
| # dotnet add CMD package mzLib -v $mzlibVersion -s ../../packages; | |
| # dotnet add GUI package mzLib -v $mzlibVersion -s ../../packages; | |
| # dotnet add GuiFunctions package mzLib -v $mzlibVersion -s ../../packages; | |
| # dotnet add EngineLayer package mzLib -v $mzlibVersion -s ../../packages; | |
| # dotnet add Test package mzLib -v $mzlibVersion -s ../../packages; | |
| # dotnet add TaskLayer package mzLib -v $mzlibVersion -s ../../packages; | |
| # dotnet restore; | |
| - name: Build MetaMorpheus | |
| run: cd ./MetaMorpheus/MetaMorpheus && dotnet build --no-restore | |
| - name: Test | |
| run: cd ./MetaMorpheus/MetaMorpheus && dotnet test --no-build --verbosity normal | |