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| name: build-and-deploy | |
| on: | |
| push: | |
| branches: | |
| - master | |
| jobs: | |
| build-and-deploy: | |
| environment: | |
| name: github-pages | |
| url: ${{ steps.deployment.outputs.page_url }} | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| python-version: 3.11 | |
| mamba-version: "*" | |
| channels: conda-forge,nodefaults | |
| activate-environment: test-env | |
| environment-file: environment.yml | |
| - name: Build page | |
| run: | | |
| snakemake -c1 --software-deployment-method conda | |
| - name: Setup Pages | |
| uses: actions/configure-pages@v3 | |
| - name: Upload artifact | |
| uses: actions/upload-pages-artifact@v3 | |
| with: | |
| path: build | |
| - name: Deploy to GitHub Pages | |
| id: deployment | |
| uses: actions/deploy-pages@v4 |