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Wrong message on get_one_hot_encoded_seqs #7

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johannesnicolaus opened this issue Mar 4, 2024 · 1 comment
Open

Wrong message on get_one_hot_encoded_seqs #7

johannesnicolaus opened this issue Mar 4, 2024 · 1 comment

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@johannesnicolaus
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On line 191 (below) of prepare_data_from_FASTA.R when option is set to sinuc, it shows the message "Generating dinucleotide profiles". I believe this should be mononucleotide instead of dinucleotide?

if (sinuc_or_dinuc == "sinuc") {
    .msg_pstr("Generating dinucleotide profiles", flg=TRUE)
    encoded_seqs <- lapply(seqs_split_as_list,
                            .one_hot_encode_sinuc)
@snikumbh
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snikumbh commented Mar 6, 2024

Hi @johannesnicolaus
Please use https://github.com/snikumbh/seqArchR. This version of archR is not updated/being maintained after the shift to seqArchR.

Thanks for the report. Yes, you are right. I see that this typo is present in seqArchR as well. I will update it.

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