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Update resource files #1436

Merged
merged 25 commits into from
Feb 5, 2024
Merged

Update resource files #1436

merged 25 commits into from
Feb 5, 2024

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bgyori
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@bgyori bgyori commented Jan 22, 2024

This PR works through updating various interlinked resource files along with the ontology graph. It also fixes some corner cases and makes improvements necessary for changes in conventions/assumptions in inputs being processed. Some specific changes:

  • UniProt resources coming from the protmapper are updated with the requirement protmapper>=0.0.29
  • HGNC and MGI gene resources updated
  • Ontologies GO, EFO, DOID, HP and MONDO updated
  • Identifiers registry info derived from Bioregistry and identifiers.org updated
  • Chemical info from CHEBI and various associated mappings updated
  • FamPlex changes propagated and grounding map updated

The BioOntology version is updated from 1.32 to 1.33.

@bgyori bgyori merged commit 1280389 into sorgerlab:master Feb 5, 2024
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@bgyori bgyori deleted the hgnc_update branch May 13, 2024 01:13
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