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Extend MeSH-PubMed and NCBI Taxonomy connection #1457

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merged 2 commits into from
Aug 13, 2024

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@bgyori bgyori commented Aug 8, 2024

This PR adds better search functions by MeSH terms in the PubMed client. It also extends the MeSH resource file to include NCBI taxonomy mappings and makes these available via the MeSH client.

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bgyori commented Aug 13, 2024

Further useful features in a future PR could be:

  • Put these mappings into the BioOntology to be used during ID normalization
  • Add dedicated functions in the mesh_client for retrieving these mappings (currently they are still available from a module-level data structure)

@bgyori bgyori merged commit ab601b7 into sorgerlab:master Aug 13, 2024
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