updates for latest jdaviz, latest example roman data

spacetelescope · Feb 6, 2024 · fd6ac80 · fd6ac80
1 parent 31576fc
commit fd6ac80
Showing 1 changed file with 58 additions and 30 deletions.
diff --git a/notebooks/concepts/imviz_roman_asdf.ipynb b/notebooks/concepts/imviz_roman_asdf.ipynb
@@ -70,9 +70,11 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "from astropy.utils.data import get_pkg_data_filename\n",
+    "from astropy.utils.data import download_file\n",
     "\n",
-    "image_model = get_pkg_data_filename('data/roman_wfi_image_model.asdf', package='jdaviz.configs.imviz.tests')"
+    "# # Each of these files is ~1 GB:\n",
+    "image_model1 = download_file('https://stsci.box.com/shared/static/be2nfy4jovdhw1cxru99kdwnfnqxxlgo.asdf', cache=True)\n",
+    "image_model2 = download_file('https://stsci.box.com/shared/static/ktpt4li627kq4mipi3er5yd4qw6hq7ll.asdf', cache=True)"
    ]
   },
   {
@@ -89,7 +91,8 @@
     "\n",
     "with warnings.catch_warnings():\n",
     "    warnings.simplefilter('ignore')  # ErfaWarning\n",
-    "    imviz.load_data(image_model, ext='data')"
+    "    imviz.load_data(image_model1, ext='data', data_label='exposure 1')\n",
+    "    imviz.load_data(image_model2, ext='data', data_label='exposure 2')"
    ]
   },
   {
@@ -107,7 +110,27 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "imviz.show()"
+    "imviz.show('sidecar:split-right', height=1000)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "52adc3d4-7f44-43aa-af46-6acb390d56e2",
+   "metadata": {},
+   "source": [
+    "We have loaded two sequential exposures with the same pointing. Let's orient both images by their WCS:"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "8427d4f9-8ea3-4d60-a8b7-3f3f63e3f3e0",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "orientation = imviz.plugins['Orientation']\n",
+    "\n",
+    "orientation.link_type = 'WCS'"
    ]
   },
   {
@@ -129,16 +152,20 @@
    "metadata": {},
    "outputs": [],
    "source": [
+    "plot_options = imviz.plugins['Plot Options']\n",
+    "\n",
     "for viewer_name in imviz.app.get_viewer_reference_names():\n",
     "    viewer = imviz.app.get_viewer(viewer_name)\n",
-    "\n",
-    "    # set colormap and stretch:\n",
-    "    viewer.stretch = 'log'\n",
-    "    viewer.set_colormap('Viridis')\n",
-    "    viewer.cuts = [1, 1e4]\n",
+    "    plot_options.viewer = viewer_name\n",
     "    \n",
-    "    # set zoom level\n",
-    "    viewer.zoom(1.25)"
+    "    for data in viewer.data():\n",
+    "        plot_options.layer = data.label\n",
+    "        \n",
+    "        # set colormap and stretch for this layer:\n",
+    "        plot_options.stretch_function = 'arcsinh'\n",
+    "        plot_options.image_colormap = 'Viridis'\n",
+    "        plot_options.stretch_vmin = 0\n",
+    "        plot_options.stretch_vmax = 20"
    ]
   },
   {
@@ -192,7 +219,8 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "mask = regions['Subset 1'].to_mask(mode='subpixels')"
+    "wcs = imviz.app.data_collection[-1].coords\n",
+    "mask = regions['Subset 1'].to_pixel(wcs).to_mask(mode='subpixels')"
    ]
   },
   {
@@ -223,6 +251,16 @@
     "You can use Astrowidgets API."
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "f2ce00c9-093c-4bc0-8cb7-b7c8fe38ec64",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "viewer = imviz.default_viewer"
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": null,
@@ -260,8 +298,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "center = regions['Subset 1'].center\n",
-    "data.wcs.pixel_to_world([center.x], [center.y]).to_string('hmsdms')"
+    "center = regions['Subset 1'].center"
    ]
   },
   {
@@ -272,7 +309,7 @@
    "outputs": [],
    "source": [
     "# Center the image on given sky coordinates.\n",
-    "sky = SkyCoord(ra=\"13h11m34.25069521s\", dec=\"-01d21m55.92127995s\")\n",
+    "sky = SkyCoord(ra=79.91038, dec=29.95529, unit=('deg', 'deg'))\n",
     "viewer.center_on(sky)"
    ]
   },
@@ -321,7 +358,7 @@
    "outputs": [],
    "source": [
     "# Set the zoom level directly.\n",
-    "viewer.zoom_level = 1"
+    "viewer.zoom_level = 100"
    ]
   },
   {
@@ -332,7 +369,7 @@
    "outputs": [],
    "source": [
     "# Set the relative zoom based on current zoom level.\n",
-    "viewer.zoom(2)"
+    "viewer.zoom(1.5)"
    ]
   },
   {
@@ -355,6 +392,7 @@
     "image_shape = data.data.shape\n",
     "t_xy = Table({'x': np.random.randint(0, image_shape[1], 20),\n",
     "              'y': np.random.randint(0, image_shape[0], 20)})\n",
+    "\n",
     "viewer.add_markers(t_xy)"
    ]
   },
@@ -366,16 +404,6 @@
     "You could customize marker color, alpha, size, and fill with values that Glue supports."
    ]
   },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "id": "7c8edb6f-c928-4aee-8e64-73a34ab020d0",
-   "metadata": {},
-   "outputs": [],
-   "source": [
-    "viewer.marker = {'color': 'green', 'alpha': 0.8, 'markersize': 10, 'fill': False}"
-   ]
-  },
   {
    "cell_type": "code",
    "execution_count": null,
@@ -488,7 +516,7 @@
    "outputs": [],
    "source": [
     "# Show the first image in the second viewer.\n",
-    "imviz.app.add_data_to_viewer(viewer_2_name, \"roman_wfi_image_model[DATA]\")"
+    "imviz.app.add_data_to_viewer(viewer_2_name, \"exposure 1[DATA]\")"
    ]
   },
   {
@@ -518,7 +546,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "viewer_2.center_on((5, 1))"
+    "viewer_2.center_on((1500, 1000))"
    ]
   },
   {
@@ -564,7 +592,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.10.8"
+   "version": "3.11.5"
   }
  },
  "nbformat": 4,