fixing 6 files with linting errors E126, E128, E251

spacetx · Mar 21, 2024 · 914ffc6 · 914ffc6
1 parent 7fe62b2
commit 914ffc6
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Showing 6 changed files with 11 additions and 11 deletions.
diff --git a/starfish/core/codebook/codebook.py b/starfish/core/codebook/codebook.py
@@ -708,7 +708,7 @@ def _view_row_as_element(array: np.ndarray) -> np.ndarray:
         max_intensities = intensities.max(Axes.CH.value)
         round_intensities = intensities.sum(Axes.CH.value)
         distance: IntensityTable = 1 - (max_intensities / round_intensities).mean(
-                                   Axes.ROUND.value)  # type: ignore
+            Axes.ROUND.value)  # type: ignore
 
         a = _view_row_as_element(codes.values.reshape(self.shape[0], -1))  # type: ignore
         b = _view_row_as_element(

diff --git a/starfish/core/codebook/test/test_metric_decode.py b/starfish/core/codebook/test/test_metric_decode.py
@@ -26,8 +26,8 @@ def intensity_table_factory(data: np.ndarray=np.array([[[0, 3], [4, 0]]])) -> In
     intensity_table = IntensityTable.from_spot_data(
         data,
         SpotAttributes(spot_attributes_data),
-        ch_values = range(data.shape[1]),
-        round_values = range(data.shape[2]),
+        ch_values=range(data.shape[1]),
+        round_values=range(data.shape[2]),
     )
     return intensity_table
 

diff --git a/starfish/core/codebook/test/test_normalize_code_traces.py b/starfish/core/codebook/test/test_normalize_code_traces.py
@@ -23,8 +23,8 @@ def intensity_table_factory() -> IntensityTable:
 
     intensity_table = IntensityTable.from_spot_data(
         intensities, spot_attributes,
-        ch_values = range(intensities.shape[1]),
-        round_values = range(intensities.shape[2]),
+        ch_values=range(intensities.shape[1]),
+        round_values=range(intensities.shape[2]),
     )
     return intensity_table
 

diff --git a/starfish/core/codebook/test/test_per_round_max_decode.py b/starfish/core/codebook/test/test_per_round_max_decode.py
@@ -24,8 +24,8 @@ def intensity_table_factory(data: np.ndarray = np.array([[[0, 3], [4, 0]]])) ->
     spot_attributes = SpotAttributes(spot_attributes_data)
     intensity_table = IntensityTable.from_spot_data(
         data, spot_attributes,
-        round_values = range(data.shape[1]),
-        ch_values = range(data.shape[2]),
+        round_values=range(data.shape[1]),
+        ch_values=range(data.shape[2]),
     )
     return intensity_table
 

diff --git a/starfish/core/image/_registration/transforms_list.py b/starfish/core/image/_registration/transforms_list.py
@@ -27,8 +27,8 @@ class TransformsList:
 
     def __init__(self,
                  transforms_list: Optional[List[Tuple[Mapping[Axes, int],
-                                             TransformType,
-                                             _GeometricTransform]]] = None
+                                                      TransformType,
+                                                      _GeometricTransform]]] = None
                  ):
         """
         Parameters

diff --git a/starfish/core/imagestack/imagestack.py b/starfish/core/imagestack/imagestack.py
@@ -773,7 +773,7 @@ def apply(
             func: Callable,
             *args,
             group_by: Optional[Set[Axes]] = None,
-            in_place = False,
+            in_place=False,
             verbose: bool = False,
             n_processes: Optional[int] = None,
             level_method: Levels = Levels.CLIP,
@@ -892,7 +892,7 @@ def transform(
             func: Callable,
             *args,
             group_by: Optional[Set[Axes]] = None,
-            verbose = False,
+            verbose=False,
             n_processes: Optional[int] = None,
             **kwargs
     ) -> List[Any]: