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Graph based decoding initial commit #1482

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Graph based decoding initial commit #1482

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3c898b6
Graph based decoding initial commit
Aug 5, 2019
70c9ebd
Fixed class to latest master commit
Aug 5, 2019
c7e4791
Minor fixes. Added test and notebook
Sep 26, 2019
7073ca5
Merge branch 'master' into gapartel-graph-based-decoding
Sep 26, 2019
0e0cfa4
fixed class dependencies and docstrings
Sep 26, 2019
f704002
Fixed reference
Sep 26, 2019
bd552bc
Fixed to new IntensityTable format
Sep 26, 2019
94dde10
added notebook tests
Sep 28, 2019
6666f9e
Merge branch 'master' into gapartel-graph-based-decoding
Sep 28, 2019
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3 changes: 3 additions & 0 deletions .travis.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -78,6 +78,9 @@ jobs:
- name: Simulation Notebook
if: type = push and (branch = master or branch =~ /-alltest/)
script: make install-dev notebooks/py/Starfish_simulation.py
- name: Graph-based Decoding Notebook
if: type = push and (branch = master or branch =~ /-alltest/)
script: make install-dev notebooks/py/graph_decoding.py
- name: ISS Notebook
if: type = push and (branch = master or branch =~ /-alltest/)
script: make install-dev notebooks/py/ISS.py
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1,338 changes: 1,338 additions & 0 deletions notebooks/graph_decoding.ipynb
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