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4.1.x ocean #22

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wants to merge 151 commits into from
Closed

4.1.x ocean #22

wants to merge 151 commits into from

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arnthor-agustsson
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Jira ticket

https://spotinst.atlassian.net/browse/BGD-4924

Checklist

  • I added a Jira ticket link

Why

We want to remove the options to shut down notebook from jupyter lab

What

Remove options
Add new favicon use ocean logo in top left navbar

How to test

Load up and test if you can see ocean logo and that you can not log out

divyansshhh and others added 30 commits November 8, 2023 12:39
* Create renderer to render errors

* WIP tests scaffold

* Implement opening files from paths in error renderer

* Finish sentence in a comment

* Apply suggestions from code review

Co-authored-by: Frédéric Collonval <fcollonval@users.noreply.github.com>

* Improve RFC 5147 adherence for ranges

* Switch to 0-based line numbers based on RFC5147 2.2.3:

"Line position counting starts with zero, so the line
position before the first line of a text/plain MIME
entity has the line position zero"

* Fix undefined check after adding `parseInt`

---------

Co-authored-by: krassowski <5832902+krassowski@users.noreply.github.com>
Co-authored-by: Frédéric Collonval <fcollonval@users.noreply.github.com>
Bumps [tj-actions/changed-files](https://github.com/tj-actions/changed-files) from 39.2.0 to 40.0.2.
- [Release notes](https://github.com/tj-actions/changed-files/releases)
- [Changelog](https://github.com/tj-actions/changed-files/blob/main/HISTORY.md)
- [Commits](tj-actions/changed-files@v39.2.0...v40.0.2)

---
updated-dependencies:
- dependency-name: tj-actions/changed-files
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
…upyterlab#15356)

* Add a test for smooth scrolling over long outputs

* Do no scroll when setting the cursor position in md cells

* Adjust test name to clarify the test case

* Add the test notebook

* Clean up the test directory
…rlab#15288)

* Add a test case for jupyterlab#14878

* Fix the smart/auto scrolling logic for long items

Items larger than the size of the viewport were not
considered by the scroll logic leading to bad UX when
smart/auto scroll was requested on certain operations.

* Use pixel-based, cell-height-derived threshold for scrolling

* Implement dual behaviour, simplify code, account for top padding

* Use greater or equal to avoid scrolling if item fully visible

* Update tests to reflect new expectations

* Clean up the temp directory after tests
* Fix scrolling on edges in file browser

* Add a simple test
* Fix update button in extension manager

* Apply suggestions from code review

Make action options more flexible

Co-authored-by: Frédéric Collonval <fcollonval@users.noreply.github.com>

* Fix docs and make install options optional

* Add test for update button

* Update Playwright Snapshots

* Revert spurious snapshot updates

---------

Co-authored-by: Frédéric Collonval <fcollonval@users.noreply.github.com>
Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>
Co-authored-by: krassowski <5832902+krassowski@users.noreply.github.com>
* Define cells to run as independent of selection

* Restore side effects of `runAll()`

* Skip optional `slice` argument

Co-authored-by: Frédéric Collonval <fcollonval@users.noreply.github.com>

* Restore previous behaviour of `runAllBelow()`

by making last cell active.

---------

Co-authored-by: Frédéric Collonval <fcollonval@users.noreply.github.com>
* Fix highlighting search in an out-of-viewport cell

* Update cells count
…5380)

* Don't show default value if schema type is `object`

* Prettier
Bumps [axios](https://github.com/axios/axios) from 1.3.4 to 1.6.1.
- [Release notes](https://github.com/axios/axios/releases)
- [Changelog](https://github.com/axios/axios/blob/v1.x/CHANGELOG.md)
- [Commits](axios/axios@v1.3.4...v1.6.1)

---
updated-dependencies:
- dependency-name: axios
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
…pyterlab#15262)

* Populate

* Improve VirtualDocument

* Add test

* Update packages/lsp/test/document.spec.ts

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>

---------

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>
* Bump typescript to 5.1.6 and rimraf to 5.0.5

* Dedupe the yarn.lock

---------

Co-authored-by: Frédéric Collonval <fcollonval@gmail.com>
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This improves performance by eliminating spurious DOM updates,
and prevents jitter on idle update when the breadcrumbs height
is modified in extensions.
* WIP

* tabFocusable

* not sure what to do with this stuff

* update keyboard shortcuts

* remove data-lm-suppress-shortcuts

* focus active cell when type changed

* check for cell

* fix onActivateRequest test

* focus active cell when ready

* some cleanup

* use ready instead of attached

* add commend about tabFocusable default being true

* whitespace

* comment on active cell tabindex 0

* check that descendant node has focus

* ensureFocus active cell

* remove console.logs

* fix ctrl shift c

* update comment

* add shouldWait option to focusActiveCell()

* lint

* more lint

* missed a spot: lint

* consistent outline

* box-shadow outline

* box-shadow

* Solve jupyterlab#1947 in a more specific way

The keydown->ensureFocus code (jupyterlab#1958) was added to fix jupyterlab#1947.

The idea was that any key event that bubbles up from within the
notebook widget but causes the focus to move somewhere outside
the notebook was something like when the user presses enter from
within a Stdin widget, causing this widget, which had focus, to
remove itself from the DOM, causing focus to get lost, meaning
returned to the body node.

But if we change the _ensureFocus method so that it ensures
focus on the active cell rather than on the notebook as a whole
it can lead to bugs like the one where the user presses tab
while on the notebook footer, triggering the keydown->ensureFocus
code, causing focus to go up the notebook, backwards (because
all cells are above the footer), which makes it impossible to tab
forward out of the notebook. Because you get into the following
loop:

cell -> ... -> footer (-> keydown->ensureFocus) -> cell -> ... -> footer ->

* preventScroll

* use brand-color for cell focus ring

* use :read-write

* remove schema

* Remove no-longer needed traversable data attribute

* Fix styling when multi-selection is active

* Update Playwright Snapshots

* Update Playwright Snapshots

* Uses bubbling phase in keydown event in CI

* Avoid triggering indentation in codemirror if completer is available

* integrity

* snapshots

* moves the completer-enable class to the editor

* Change the selector to select and delete all cells

* Remove the linebreak shortcut in notebook console, since the linebreak is already handled by Enter

* Remove ':focus:not(:read-write)' in selector, useless now the keydown is handled on bubbling

* Remove duplicated shortcuts

* Handles 'Enter' key when the completer is active

* Set the focus to a child node instead of the Notebook node.

* Handle the focus on Notbeook in windowed panel

* Hide code cells with widget functions and CSS to avoid using checkVisibility(), and fix notebook actions tests

* Do not attach/detach codecell when windowing, to avoid inconstitancy state

* Restore actions sync

* ui-test snapshots

* Handle the expected failures in notebook actions tests

* Do not allow setting the keyboard event mode in page config

* Updates benchmark snapshots

* Merge main in fix-tab-trap-notebook-cells, and fix conficts

* Revert "Merge main in fix-tab-trap-notebook-cells, and fix conficts"

This reverts commit b7f5d93.

* Revert changes related to windowing (it is handle in main branch)

* Remove visibility check on activeCell before focusing, since it should always be visible now

* Wait for the cell to be ready before focusing

* fix promises not awaited and update ui-test -> documentation -> general snapshot

* Avoid focus looping in active cell

---------

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>
Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>
Co-authored-by: Nicolas Brichet <nicolas.brichet@quantstack.net>
* Bump yarn to 3.6.4

* Update extension_migration.rst

* Update yarn.lock files
* Bump lumino to the latest version

* Fix integrity
* Optimized and more robust PyPIExtensionManager

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* Fix PyPI constructor

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* Protect cell toolbar lifecycle

* Use factory not toolbar items

* Ingore test file

* [skip ci] Clarify code comment

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>

* Fix adding toolbar in full windowing mode

* For rendering toolbar items

---------

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>
* adds notification if execute is called from a keybinding

* adds notification when attempting to save with keybindings

* adds check on args._luminoEvent

* add readonly notification function for consistancy

* trying to add test

* adds readonly test

* Update galata/src/galata.ts

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>

* add failsafe dialog

---------

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>
* Restore the focus on the active cell when typing

* Update packages/notebook/src/widget.ts

Co-authored-by: Frédéric Collonval <fcollonval@users.noreply.github.com>

---------

Co-authored-by: Frédéric Collonval <fcollonval@users.noreply.github.com>
…erlab#15021)

* Use webcomponent for toolbar

* Tune web components styling
Support injecting the icon without wrapper

* Adds jp-select in notebook toolbar and center elements in toolbar

* fix filebrowser toolbar

* Fix select sizing and styling upstream

* Fix toolbar popup

* Set jupyter toolkit deps as singleton

* Update Playwright Snapshots

* Fix jest

* Fix CSS selector

* Fix tests in apputils and debugger packages

* Avoid setting attributes to React.Fragment in LabIcon

* Fixes ui-components tests

* updates snapshots in examples, and add some CSS rules

* Update snapshot in examples

* Fix some selectors in the notebook helper of galata

* Vertical center the cell toolbar

* Update snapshots and selectors in documentation

* Update galata and jupyterlab snapshots in ui-tests... Pfff

* Fix some more selectors in ui-tests, and style of notifications

* Remove the function to close the filebrower in favor of the existing 'sidebar.close()' helper function

* update some more snapshots

* Fix reactive toolbar and update snapshots

* lint

* Fixing debugger 'Start debug session' integration test (?)

* Improve handling of Jupyter theme

* Make helpers backward compatible

* Simplify styling for toggle button using aria-pressed

* Refactor toolbar gap item definition

* Upgrade toolkit

* Remove empty style file

* Automatic application of license header

* Remove ref to deleted file

* fix lint and ui-component test

* Update Playwright Snapshots

* update examples snapshots

* Update galata/jupyterlab snapshots

* some more snapshots

* Fix filebrowser refresh selector

* Replace buttons by divs in the debugger KernelSource panel

* Fix "Paste cell" integration test

* restore 'Running kernels and consoles' buttons' color

* Restore documentation debugger snapshot

* snapshots

* Restore the position of the refresh button in running session panel

* Fix reactive toolbar computation

* Fix the run button focus in documentation

* Stop click event on toolbar button to avoid focus leaving the editor.

* snapshots

* Documentation snapshots

* Change the sidepanel toolbar's role to 'toolbar'

* Wait for cell toolbar to be displayed in benchmark tests

* Update the selector of the cell editor in notebook helper of galata, and update snapshots

* Fix 'enterCellEditingMode()' in galata's notebook helper

* Bump package to fix typing issue

* Snapshots, after rebase

* Restore class on button label, and remove useless '.jp-mod-styled' class on buttons in running kernel sidebar

* Items in reactive toolbar are inserted back at their initial position

* Restore the HTMLSelect, since the web component select is not yet ready

* integrity

* Update documentation and examples snapshots

* Avoid rendering command toolbar buttons without registered command

* Galata snapshots

* Fix style on button with label and icon, and fix some selector in integration test

* Revert cursor position when clicking on cell editor, and fix metadataform integration test

* Add commands in debugger test to render the related button

* Fix the debugger toolbar without breaking the other ones

* Improve some CSS selectors and restore the position of kernel status indicator

* Adds jest config changes in extension migration

* Update Playwright Snapshots

* Update Playwright Snapshots

* Update Playwright Snapshots

* Update Playwright Snapshots

* Update docs/source/extension/extension_migration.rst

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>

* Update docs/source/extension/extension_migration.rst

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>

* Remove useless style property

* Remove debug leftover in ui-tests

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>

* snapshots

* Try to fix readonly test

---------

Co-authored-by: Frédéric Collonval <fcollonval@gmail.com>
Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>
Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>
* Upgrade releaser workflows for silent support

* Remove token from workflow dispatch
* Add a test case against shortcuts intercepting stdin typing

This currently fails with:
  Expected string: "abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789"
  Received string: "abcdefghijklmnopqrstuvwxyzABCDEFGHIJKMNOPQRSTUVWXYZ0123456789"

* Add missing `:not(:read-write)` selector for Shift+L

* Remove duplicated shortcut for `notebook:toggle-all-cell-line-numbers`
* Simplify/fix is open check

* Improve kernel test robustness now that tests run faster:

- do not check text immediately as the kernel needs to connect first
- quality of life: instead of using nth selector, use proper category
  selectors which helps when testing with more kernels installed
krassowski and others added 28 commits January 27, 2024 22:26
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* Add scroll-margin-top to headings

* Update Playwright Snapshots

* Update two snapshots to reflect new ui-tookit version

which solved a problem with background of disabled buttons

---------

Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>
* Test search state updating on empty query

* Extra unit test for `searchExpression`

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…5650)

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…rlab#15710)

* Update contributing.rst

Removes a couple of references to obsolete, end-of-life software

* Update contributing.rst

Fixes intra-page link

---------

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>
* fix: Solve the problem of failure of code/content/ui font-size change in non-English language

* refactor: code/content/ui font-size change

* feat: add UI test for change font size

* fix: two Running Terminals and Kernels sidepanel scrollbar

---------

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* Add a test for shortcuts respecting defaults (such as `overrides.json`)

* Run tests for `shortcuts-extension` on CI

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* Fix missing `build:test` command

* Add `mermaid` label to labeller config
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* Mirror the tests for scroll for non-windowed notebook

* Fix scrolling on Shift+Enter in defer and Ctrl+Enter in both modes.

* Fix scrolling to anchor test in non-windowed mode

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MDN: https://developer.mozilla.org/en-US/docs/Web/API/Element/scrollTop

* Add test for running in place

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* Better mock to silence code scanning warnings

* Update markdown rendering test

* Fix typo in `splitCell` description

* Catch internally re-generated promise

* Update a comment following review

* Correct mode in test file

* Review: rename utility test function

* Review: `cellBBox` → `cellBbox`

* Review: remove `scroll` arg from `handleRunState`

* Fix duplicated line

* Apply suggestions on comments/documentation

Co-authored-by: gabalafou <gabriel@fouasnon.com>

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

---------

Co-authored-by: gabalafou <gabriel@fouasnon.com>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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)

* force self-closing breaking space tags in generated mermaid svg

* expand void element regular expression

* use explicit securityLevel

* add more diagram examples to browser test

* remove MIME string from test mermaid test notebook

* roll back existing test change, add diagram gallery test

* rework test selectors

* add screenshots from ci

* fix mermaid snapshot naming

* remove gitgraph screenshots because random hashes

* more mermaid screenshot work

* more isolated, verbose diagram screenshot names

* more screenshots

* add unit tests for void element cleaning

* another unclosed tag

* Fix snapshots for large diagrams

* Scale the diagram up to avoid having a small blurry blob

* Update Playwright Snapshots

---------

Co-authored-by: krassowski <5832902+krassowski@users.noreply.github.com>
Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>
Bumps the actions group with 3 updates: [toshimaru/auto-author-assign](https://github.com/toshimaru/auto-author-assign), [actions/cache](https://github.com/actions/cache) and [tj-actions/changed-files](https://github.com/tj-actions/changed-files).


Updates `toshimaru/auto-author-assign` from 2.0.1 to 2.1.0
- [Release notes](https://github.com/toshimaru/auto-author-assign/releases)
- [Changelog](https://github.com/toshimaru/auto-author-assign/blob/main/CHANGELOG.md)
- [Commits](toshimaru/auto-author-assign@v2.0.1...v2.1.0)

Updates `actions/cache` from 3 to 4
- [Release notes](https://github.com/actions/cache/releases)
- [Changelog](https://github.com/actions/cache/blob/main/RELEASES.md)
- [Commits](actions/cache@v3...v4)

Updates `tj-actions/changed-files` from 41.0.1 to 42.0.2
- [Release notes](https://github.com/tj-actions/changed-files/releases)
- [Changelog](https://github.com/tj-actions/changed-files/blob/main/HISTORY.md)
- [Commits](tj-actions/changed-files@v41.0.1...v42.0.2)

---
updated-dependencies:
- dependency-name: toshimaru/auto-author-assign
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: actions
- dependency-name: actions/cache
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: actions
- dependency-name: tj-actions/changed-files
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: actions
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
…5732)

* fix: collapse-cell-toolbar-stuck

* Update comment wording

---------

Co-authored-by: yelipei <yelipei@qianxin.com>
Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>
* Bump the actions group with 3 updates

Bumps the actions group with 3 updates: [pandas](https://github.com/pandas-dev/pandas), [scipy](https://github.com/scipy/scipy) and [ruff](https://github.com/astral-sh/ruff).


Updates `pandas` from 2.1.4 to 2.2.0
- [Release notes](https://github.com/pandas-dev/pandas/releases)
- [Commits](pandas-dev/pandas@v2.1.4...v2.2.0)

Updates `scipy` from 1.11.4 to 1.12.0
- [Release notes](https://github.com/scipy/scipy/releases)
- [Commits](scipy/scipy@v1.11.4...v1.12.0)

Updates `ruff` from 0.1.11 to 0.1.15
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@v0.1.11...v0.1.15)

---
updated-dependencies:
- dependency-name: pandas
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: actions
- dependency-name: scipy
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: actions
- dependency-name: ruff
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: actions
...

Signed-off-by: dependabot[bot] <support@github.com>

* Remove unnecessary `noqa` and align ruff version

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: krassowski <5832902+krassowski@users.noreply.github.com>
* Added overflow-x: hidden in jp-Completer-list css to suppress horizontal scrollbars

* Removed second overflow-x & changed original overflow-x to hidden
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move ocean specific code to 4.1.0
* [pre-commit.ci] pre-commit autoupdate (#15750)

* [pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/python-jsonschema/check-jsonschema: 0.27.3 → 0.27.4](https://github.com/python-jsonschema/check-jsonschema/compare/0.27.3...0.27.4)
- [github.com/astral-sh/ruff-pre-commit: v0.1.15 → v0.2.0](https://github.com/astral-sh/ruff-pre-commit/compare/v0.1.15...v0.2.0)

* Align ruff version in `pyproject.toml` with pre-commit

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: krassowski <5832902+krassowski@users.noreply.github.com>

* Catch OSError in addition to PermissionError when sys_prefix is read-only. (#15461) (#15756)

* Fix failing "Notebook Toolbar › Paste cell" test (#15720)

* Paste zeroth rather than first cell as that has less content

which solve the issue of cell toolbar not appearing

* Update Playwright Snapshots

---------

Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>

* Add post-mortem for 3.6.7 release (#15743)

* Update maintainers affiliation (#15724)

* Update maintainers affiliation

* Update Mike's affiliation

---------

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>

* Fix outputs preservation on splitting cells (#15751)

* Add unit test for splitting cell preserving output

* Preserve code cell outputs in the last cell on split

* Fix migration of multiple command selectors (#15762)

Previously only first selector occurrence would be migrated
due to warning check being positioned incorrectly

* Disable (shift + )alt + number shortcuts on Mac (#15761)

* Update changelog to reflect jupyter-ai release, (#15775)

and pick some grammar/wording suggestions from Jason

Co-authored-by: Jason Weill <93281816+JasonWeill@users.noreply.github.com>

* Update lifecycle info for JupyterLab major versions (#15626)

* Update lifecycle info

* Update overview.rst

* Create lifecycle.rst

* Use list table

* Header rows in lifecycle table

* Update lifecycle.rst

Reverts parameter which was not honored in build

* Adds link to lifecycle from contributor docs, adds note for Lab 3 timing

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* Fix link syntax

* Fix link destination and style

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* Fix completer auto-invoking on non-source changes (#15753)

* Add a test for completer not invoking on non-source changes

* Filter shared model `changed` signal before invoking `onTextChanged`

* Move comment and use more explicit typing/explanation

* Fix a failing test that was demonstrating incorrect behaviour

because it was expecting `handleTextChange` to be called
when an empty signal is emitted

* Update `jupyter-collaboration` for the Binder environment (#15767)

* Fix console cells not becoming read-only after execution (#15779)

* Add test for console cells becoming readonly on execution

There is both a unit test and an integration test because
the unit test is not able to catch the race condition related
to signal clearance, nor check the visibility of the cursor.

* Process cell's update before disconnecting its signals,

fixing `readOnly` config (handled in `Cell.onUpdateRequest`)
not getting properly propagated to the CodeMirror editor.

* Fix specificity of readonly style

* Use idle callback instead of flushing, because flushing

has side effects on other messages and lead to the input
of the next cell not being properly focused as caught by
visual regression tests.

* Add Edge, remove IE 11 (#15784)

* Fix undo/redo in console, fix undo/redo enabled state in file editor (#15783)

* Fix undo and redo in console by making the console jp-undoer

and adding respective commands; this also fixes undo/redo being
permanently disabled for console in the edit menu.

* Use `canUndo`/`canRedo` in file editor too

* Add tests for console context menus

* Move undo/redo to above "Show Contextual Help" to align

with where undo/redo is in the file editor and notebook
(relative to "Show" commands).

* Update the file editor context menu snapshot; both undo/redo are now

greyed out as disabled because the undo/redo stacks are empty as not
edits were introduced yet to the file. Previously they were incorrectly
permanently active, confusing the user.

* Add snapshots for console context menus

* Move the undo/redo bindings up in the schema file

* Correct Alt + number keyboard shortcuts command map (#15791)

* keyboard shortcuts mapped to correct functionality

* Update packages/application-extension/schema/commands.json

Co-authored-by: Nicolas Brichet <32258950+brichet@users.noreply.github.com>

* Update packages/application-extension/schema/commands.json

Co-authored-by: Nicolas Brichet <32258950+brichet@users.noreply.github.com>

---------

Co-authored-by: Nicolas Brichet <32258950+brichet@users.noreply.github.com>

* catch errors attempting to access document.cookie (#15788)

behave as if cookie is empty

accessing `document.cookie` can raise SecurityError if page is served by `Content-Security-Policy: sandbox`

* [ci skip] Publish 4.1.1

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* Fix outdated link to mybinder.org on index page of documentation (#15800)

This PR is in response to #15799

The current link "Try JupyterLab on Binder" on `index.rst` points to the commit 

https://github.com/jupyterlab/jupyterlab-demo/commit/3818244680a477cdead8182216f5c87e685e0bee

which is not producing a valid binder image anymore.

Here, the link is changed to point to HEAD, like in `README.md`, which yields a functioning binder session.

* Restore notebook scrolling on dragging a cell to the viewport edge (#15782)

* Test for notebook scrolling on dragging cell to an edge

* Move `data-lm-dragscroll` to `.jp-WindowedPanel-outer`

which has been the scroller node since the virtual scrollbar
PR refactored the DOM structure of the notebook (in 4.1.0).

* Fix typing in editable elements inside of open shadow DOM (#15774)

* Add a test case for typing in an input in shadow DOM

* Introduce `.jp-mod-readWrite` class exposing `:read-write`

Contrarily to `:read-write` the new class can be used to
detect the focus state of editable elements buried in the
open shadow DOM.

* Document keyboard interactions in outputs/`lm-suppress-shortcuts`

* Implement `.jp-mod-readWrite` in console too,

rename and move the utility function (`hasActiveEditableElement`)
to DOMUtils as it is now used in both notebook and console,
add tests for this function.

* Keep the `:not(:read-write)` part on `[data-jp-kernel-user]`

to err on the side of caution, as these could be used in donwstream
widgets for which we do not control the DOM so these could lack the
newly added `:not(.jp-mod-readWrite)`

* Fix a typo in a test file

* Align the selector migration rule

* Use `toggle` to simplify the code

Co-authored-by: Nicolas Brichet <32258950+brichet@users.noreply.github.com>

* Apply suggestions from code review

Co-authored-by: gabalafou <gabriel@fouasnon.com>

* Correct TODO comment

Co-authored-by: gabalafou <gabriel@fouasnon.com>

* Fix hanging bracket

---------

Co-authored-by: Nicolas Brichet <32258950+brichet@users.noreply.github.com>
Co-authored-by: gabalafou <gabriel@fouasnon.com>

* Fix highlight sequencing when replacing text in code cells (#15803)

* Fix typo in comment

* Fix currentIndex logic when replacing search match

* Additional test for selection in mid-cell

* Tests code cells specifically

* Lint fixes

* Isolates code cell mid-cell test

* Update packages/codemirror/src/searchprovider.ts

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>

* Simplifies logic, deferring to caller to call highlightNext

---------

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>

* Windows platforms, erratic pasting of text into Markdown field (#15794)

* Windows platforms, erratic pasting of text into Markdown field

Due to different line ending in windows display and data got corrupted.
Fixed by correcting paste handling of text in
packages/cells/src/widgets.ts

fixes: https://github.com/jupyterlab/jupyterlab/issues/14752

* Code formatting corrected.

* Changed string delimiter.

* Added carriage return replacement for pasteing on osx.

* adjusted formating of code

* Add a test for replacing line endings on paste

Co-authored-by: Kilian Singer <kilian.singer@quantumtechnology.info>

* Add mocks for `ClipboardEvent` and `DataTransfer`

---------

Co-authored-by: krassowski <5832902+krassowski@users.noreply.github.com>

* Remove SO links, add more recent issue to FAQ (#15811)

* Remove SO links, add more recent issue to FAQ

* Replace one more SO link with the direct link to MS docs

* [docker] Allow non-unique GID (#15699)

* Allow non-unique GID

* update CI

* Update context path

* Update dependencies

* [ci skip] Publish 4.1.2

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* Bump ip from 2.0.0 to 2.0.1 (#15831)

Bumps [ip](https://github.com/indutny/node-ip) from 2.0.0 to 2.0.1.
- [Commits](https://github.com/indutny/node-ip/compare/v2.0.0...v2.0.1)

---
updated-dependencies:
- dependency-name: ip
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Fix code sample (`app.services` does not exist) (#15838)

* Fix workspaces URL guard (#15842)

* Update branch configuration for `4.1.x` (#15848)

* Backport PR #15851: Fix broken link (#15852)

Co-authored-by: Frédéric Collonval <frederic.collonval@webscit.com>

* Backport PR #15854: Fix clean script (#15858)

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>

* Backport PR #15880: Update docstrings to mention Jupyter Server API (#15884)

Co-authored-by: Jeremy Tuloup <jeremy.tuloup@gmail.com>

* Backport PR #15810: When attaching only typeset after rendering is completed (#15879)

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>

* Backport PR #15805: Fix codemirror highlight for Python builtin (#15882)

Co-authored-by: Allan Chain <36528777+AllanChain@users.noreply.github.com>

* Backport PR #15873: Fix missing signals in file editor adapter (#15886)

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>

* Backport PR #15878: Bump es5-ext from 0.10.62 to 0.10.63 (#15883)

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Backport PR #15843 on branch 4.1.x (Fix saving of item positions in reactive toolbar) (#15906)

* Backport PR #15843: Fix saving of item positions in reactive toolbar

* Restore the galata function to resize sidebar in documentation/utils (instead of sidebar's helper) and add a copy of it in jupyterlab/utils

---------

Co-authored-by: Nicolas Brichet <32258950+brichet@users.noreply.github.com>
Co-authored-by: Nicolas Brichet <nicolas.brichet@quantstack.net>

* Backport PR #15790: Prevent command shortcuts from preventing user input (#15904)

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>

* Backport PR #15869: Fix Pressing enter in console with console run keystroke set to enter creates a newline and runs (#15910)

Co-authored-by: FoSuCloud <49218295+FoSuCloud@users.noreply.github.com>

* [ci skip] Publish 4.1.3

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* Backport PR #15899: Add an explicit default for inline completer providers (#15914)

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>

* Backport PR #15898: Fix spurious dedent when opening inspector tooltip (#15917)

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>

* Backport PR #15938: Revert "Prevent command shortcuts from preventing user input" (#15940)

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>

* Backport PR #15924: Fix Theme color is not applied to SwitchKernel ToolbarButton (#15941)

Co-authored-by: FoSuCloud <49218295+FoSuCloud@users.noreply.github.com>

* Backport PR #15291: Fix creating files in custom drives, fix `ContentsManagerMock` (#15942)

Co-authored-by: Jeremy Tuloup <jeremy.tuloup@gmail.com>

* [ci skip] Publish 4.1.4

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* Backport PR #15935: Fixes filter for Chinese, other non-ASCII filenames (#15950)

Co-authored-by: Jason Weill <93281816+JasonWeill@users.noreply.github.com>

* Backport PR #15954: Avoid concurrency when computing the items in notebook toolbar (#15961)

Co-authored-by: Nicolas Brichet <32258950+brichet@users.noreply.github.com>

* Backport PR #15959: Ignore links to GitHub user and organisation profiles (#15963)

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>

* Backport PR #15892: Fix browser-test.js (#15975)

Co-authored-by: Frédéric Collonval <frederic.collonval@webscit.com>

* Backport PR #15970: Short-circuit `selectItemByName()` if already selected (#15983)

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>

* Backport PR #15860: Show outline on the full item in file browser, only when needed (#15984)

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>

* Backport PR #15834: Uses the browser window's selection as the default search query (#15994)

Co-authored-by: Jason Weill <93281816+JasonWeill@users.noreply.github.com>

* Backport PR #15957: Fix Theme color is not applied to Toolbar Button (#15995)

Co-authored-by: FoSuCloud <49218295+FoSuCloud@users.noreply.github.com>

* [ci skip] Publish 4.1.5

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* [pre-commit.ci] pre-commit autoupdate (#15750)

* [pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/python-jsonschema/check-jsonschema: 0.27.3 → 0.27.4](https://github.com/python-jsonschema/check-jsonschema/compare/0.27.3...0.27.4)
- [github.com/astral-sh/ruff-pre-commit: v0.1.15 → v0.2.0](https://github.com/astral-sh/ruff-pre-commit/compare/v0.1.15...v0.2.0)

* Align ruff version in `pyproject.toml` with pre-commit

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: krassowski <5832902+krassowski@users.noreply.github.com>

* Catch OSError in addition to PermissionError when sys_prefix is read-only. (#15461) (#15756)

* Fix failing "Notebook Toolbar › Paste cell" test (#15720)

* Paste zeroth rather than first cell as that has less content

which solve the issue of cell toolbar not appearing

* Update Playwright Snapshots

---------

Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>

* Add post-mortem for 3.6.7 release (#15743)

* Update maintainers affiliation (#15724)

* Update maintainers affiliation

* Update Mike's affiliation

---------

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>

* Fix outputs preservation on splitting cells (#15751)

* Add unit test for splitting cell preserving output

* Preserve code cell outputs in the last cell on split

* Fix migration of multiple command selectors (#15762)

Previously only first selector occurrence would be migrated
due to warning check being positioned incorrectly

* Disable (shift + )alt + number shortcuts on Mac (#15761)

* Update changelog to reflect jupyter-ai release, (#15775)

and pick some grammar/wording suggestions from Jason

Co-authored-by: Jason Weill <93281816+JasonWeill@users.noreply.github.com>

* Update lifecycle info for JupyterLab major versions (#15626)

* Update lifecycle info

* Update overview.rst

* Create lifecycle.rst

* Use list table

* Header rows in lifecycle table

* Update lifecycle.rst

Reverts parameter which was not honored in build

* Adds link to lifecycle from contributor docs, adds note for Lab 3 timing

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* Fix link syntax

* Fix link destination and style

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* Fix completer auto-invoking on non-source changes (#15753)

* Add a test for completer not invoking on non-source changes

* Filter shared model `changed` signal before invoking `onTextChanged`

* Move comment and use more explicit typing/explanation

* Fix a failing test that was demonstrating incorrect behaviour

because it was expecting `handleTextChange` to be called
when an empty signal is emitted

* Update `jupyter-collaboration` for the Binder environment (#15767)

* Fix console cells not becoming read-only after execution (#15779)

* Add test for console cells becoming readonly on execution

There is both a unit test and an integration test because
the unit test is not able to catch the race condition related
to signal clearance, nor check the visibility of the cursor.

* Process cell's update before disconnecting its signals,

fixing `readOnly` config (handled in `Cell.onUpdateRequest`)
not getting properly propagated to the CodeMirror editor.

* Fix specificity of readonly style

* Use idle callback instead of flushing, because flushing

has side effects on other messages and lead to the input
of the next cell not being properly focused as caught by
visual regression tests.

* Add Edge, remove IE 11 (#15784)

* Fix undo/redo in console, fix undo/redo enabled state in file editor (#15783)

* Fix undo and redo in console by making the console jp-undoer

and adding respective commands; this also fixes undo/redo being
permanently disabled for console in the edit menu.

* Use `canUndo`/`canRedo` in file editor too

* Add tests for console context menus

* Move undo/redo to above "Show Contextual Help" to align

with where undo/redo is in the file editor and notebook
(relative to "Show" commands).

* Update the file editor context menu snapshot; both undo/redo are now

greyed out as disabled because the undo/redo stacks are empty as not
edits were introduced yet to the file. Previously they were incorrectly
permanently active, confusing the user.

* Add snapshots for console context menus

* Move the undo/redo bindings up in the schema file

* Correct Alt + number keyboard shortcuts command map (#15791)

* keyboard shortcuts mapped to correct functionality

* Update packages/application-extension/schema/commands.json

Co-authored-by: Nicolas Brichet <32258950+brichet@users.noreply.github.com>

* Update packages/application-extension/schema/commands.json

Co-authored-by: Nicolas Brichet <32258950+brichet@users.noreply.github.com>

---------

Co-authored-by: Nicolas Brichet <32258950+brichet@users.noreply.github.com>

* catch errors attempting to access document.cookie (#15788)

behave as if cookie is empty

accessing `document.cookie` can raise SecurityError if page is served by `Content-Security-Policy: sandbox`

* [ci skip] Publish 4.1.1

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* Fix outdated link to mybinder.org on index page of documentation (#15800)

This PR is in response to #15799

The current link "Try JupyterLab on Binder" on `index.rst` points to the commit 

https://github.com/jupyterlab/jupyterlab-demo/commit/3818244680a477cdead8182216f5c87e685e0bee

which is not producing a valid binder image anymore.

Here, the link is changed to point to HEAD, like in `README.md`, which yields a functioning binder session.

* Restore notebook scrolling on dragging a cell to the viewport edge (#15782)

* Test for notebook scrolling on dragging cell to an edge

* Move `data-lm-dragscroll` to `.jp-WindowedPanel-outer`

which has been the scroller node since the virtual scrollbar
PR refactored the DOM structure of the notebook (in 4.1.0).

* Fix typing in editable elements inside of open shadow DOM (#15774)

* Add a test case for typing in an input in shadow DOM

* Introduce `.jp-mod-readWrite` class exposing `:read-write`

Contrarily to `:read-write` the new class can be used to
detect the focus state of editable elements buried in the
open shadow DOM.

* Document keyboard interactions in outputs/`lm-suppress-shortcuts`

* Implement `.jp-mod-readWrite` in console too,

rename and move the utility function (`hasActiveEditableElement`)
to DOMUtils as it is now used in both notebook and console,
add tests for this function.

* Keep the `:not(:read-write)` part on `[data-jp-kernel-user]`

to err on the side of caution, as these could be used in donwstream
widgets for which we do not control the DOM so these could lack the
newly added `:not(.jp-mod-readWrite)`

* Fix a typo in a test file

* Align the selector migration rule

* Use `toggle` to simplify the code

Co-authored-by: Nicolas Brichet <32258950+brichet@users.noreply.github.com>

* Apply suggestions from code review

Co-authored-by: gabalafou <gabriel@fouasnon.com>

* Correct TODO comment

Co-authored-by: gabalafou <gabriel@fouasnon.com>

* Fix hanging bracket

---------

Co-authored-by: Nicolas Brichet <32258950+brichet@users.noreply.github.com>
Co-authored-by: gabalafou <gabriel@fouasnon.com>

* Fix highlight sequencing when replacing text in code cells (#15803)

* Fix typo in comment

* Fix currentIndex logic when replacing search match

* Additional test for selection in mid-cell

* Tests code cells specifically

* Lint fixes

* Isolates code cell mid-cell test

* Update packages/codemirror/src/searchprovider.ts

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>

* Simplifies logic, deferring to caller to call highlightNext

---------

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>

* Windows platforms, erratic pasting of text into Markdown field (#15794)

* Windows platforms, erratic pasting of text into Markdown field

Due to different line ending in windows display and data got corrupted.
Fixed by correcting paste handling of text in
packages/cells/src/widgets.ts

fixes: https://github.com/jupyterlab/jupyterlab/issues/14752

* Code formatting corrected.

* Changed string delimiter.

* Added carriage return replacement for pasteing on osx.

* adjusted formating of code

* Add a test for replacing line endings on paste

Co-authored-by: Kilian Singer <kilian.singer@quantumtechnology.info>

* Add mocks for `ClipboardEvent` and `DataTransfer`

---------

Co-authored-by: krassowski <5832902+krassowski@users.noreply.github.com>

* Remove SO links, add more recent issue to FAQ (#15811)

* Remove SO links, add more recent issue to FAQ

* Replace one more SO link with the direct link to MS docs

* [docker] Allow non-unique GID (#15699)

* Allow non-unique GID

* update CI

* Update context path

* Update dependencies

* [ci skip] Publish 4.1.2

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* Bump ip from 2.0.0 to 2.0.1 (#15831)

Bumps [ip](https://github.com/indutny/node-ip) from 2.0.0 to 2.0.1.
- [Commits](https://github.com/indutny/node-ip/compare/v2.0.0...v2.0.1)

---
updated-dependencies:
- dependency-name: ip
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Fix code sample (`app.services` does not exist) (#15838)

* Fix workspaces URL guard (#15842)

* Update branch configuration for `4.1.x` (#15848)

* Backport PR #15851: Fix broken link (#15852)

Co-authored-by: Frédéric Collonval <frederic.collonval@webscit.com>

* Backport PR #15854: Fix clean script (#15858)

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>

* Backport PR #15880: Update docstrings to mention Jupyter Server API (#15884)

Co-authored-by: Jeremy Tuloup <jeremy.tuloup@gmail.com>

* Backport PR #15810: When attaching only typeset after rendering is completed (#15879)

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>

* Backport PR #15805: Fix codemirror highlight for Python builtin (#15882)

Co-authored-by: Allan Chain <36528777+AllanChain@users.noreply.github.com>

* Backport PR #15873: Fix missing signals in file editor adapter (#15886)

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>

* Backport PR #15878: Bump es5-ext from 0.10.62 to 0.10.63 (#15883)

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Backport PR #15843 on branch 4.1.x (Fix saving of item positions in reactive toolbar) (#15906)

* Backport PR #15843: Fix saving of item positions in reactive toolbar

* Restore the galata function to resize sidebar in documentation/utils (instead of sidebar's helper) and add a copy of it in jupyterlab/utils

---------

Co-authored-by: Nicolas Brichet <32258950+brichet@users.noreply.github.com>
Co-authored-by: Nicolas Brichet <nicolas.brichet@quantstack.net>

* Backport PR #15790: Prevent command shortcuts from preventing user input (#15904)

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>

* Backport PR #15869: Fix Pressing enter in console with console run keystroke set to enter creates a newline and runs (#15910)

Co-authored-by: FoSuCloud <49218295+FoSuCloud@users.noreply.github.com>

* [ci skip] Publish 4.1.3

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* Backport PR #15899: Add an explicit default for inline completer providers (#15914)

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>

* Backport PR #15898: Fix spurious dedent when opening inspector tooltip (#15917)

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>

* Backport PR #15938: Revert "Prevent command shortcuts from preventing user input" (#15940)

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>

* Backport PR #15924: Fix Theme color is not applied to SwitchKernel ToolbarButton (#15941)

Co-authored-by: FoSuCloud <49218295+FoSuCloud@users.noreply.github.com>

* Backport PR #15291: Fix creating files in custom drives, fix `ContentsManagerMock` (#15942)

Co-authored-by: Jeremy Tuloup <jeremy.tuloup@gmail.com>

* [ci skip] Publish 4.1.4

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* Backport PR #15935: Fixes filter for Chinese, other non-ASCII filenames (#15950)

Co-authored-by: Jason Weill <93281816+JasonWeill@users.noreply.github.com>

* Backport PR #15954: Avoid concurrency when computing the items in notebook toolbar (#15961)

Co-authored-by: Nicolas Brichet <32258950+brichet@users.noreply.github.com>

* Backport PR #15959: Ignore links to GitHub user and organisation profiles (#15963)

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>

* Backport PR #15892: Fix browser-test.js (#15975)

Co-authored-by: Frédéric Collonval <frederic.collonval@webscit.com>

* Backport PR #15970: Short-circuit `selectItemByName()` if already selected (#15983)

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>

* Backport PR #15860: Show outline on the full item in file browser, only when needed (#15984)

Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>

* Backport PR #15834: Uses the browser window's selection as the default search query (#15994)

Co-authored-by: Jason Weill <93281816+JasonWeill@users.noreply.github.com>

* Backport PR #15957: Fix Theme color is not applied to Toolbar Button (#15995)

Co-authored-by: FoSuCloud <49218295+FoSuCloud@users.noreply.github.com>

* [ci skip] Publish 4.1.5

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