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1. epigen/mr.pareto epigen/mr.pareto Public

   MR.PARETO - Modules & Recipes for Pragmatic Augmentation of Research Efficiency Towards Optimum

   Python 23 1

2. OpenBioLink/SimulateGPT OpenBioLink/SimulateGPT Public

   Large language models as universal biomedical simulators

   R 12 2

3. epigen/atacseq_pipeline epigen/atacseq_pipeline Public

   Ultimate ATAC-seq Data Processing & Quantification Workflow. A Snakemake implementation of the BSF's ATAC-seq Data Processing Pipeline extended by downstream quantification and annotation steps usi…

   Python 43 2

4. epigen/unsupervised_analysis epigen/unsupervised_analysis Public

   A general purpose Snakemake workflow to perform unsupervised analyses (dimensionality reduction & cluster analysis) and visualizations of high-dimensional data.

   Python 20 3

5. epigen/dea_limma epigen/dea_limma Public

   A Snakemake workflow for performing and visualizing differential expression analyses (DEA) on NGS data powered by the R package limma.

   R 18 1

6. epigen/enrichment_analysis epigen/enrichment_analysis Public

   A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.

   Python 26 1