Merge branch 'master' of github.com:ssi-dk/bifrost_chewbbaca #9

	name: run_tests

	on:
	workflow_dispatch:
	push:
	branches:
	- test
	jobs:
	deploy:
	runs-on: ubuntu-20.04
	steps:
	- name: Checkout
	uses: actions/checkout@v2
	- name: Set up Python
	uses: actions/setup-python@v2
	with:
	python-version: '3.8'
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install setuptools wheel twine
	- name: Build docker image
	run: \|
	docker build --build-arg BUILD_ENV=test -t ${{ github.event.repository.name }} .
	- name: Get_tests_data
	run: >
	git clone https://github.com/ssi-dk/bifrost_test_data.git;
	cd bifrost_test_data/samples;
	bash download_S1.sh
	- name: Run_tests
	run: >
	docker run
	-w /bifrost/components/${{ github.event.repository.name }}
	-v /home/runner/work/${{ github.event.repository.name }}/${{ github.event.repository.name }}/bifrost_test_data:/bifrost/test_data
	--entrypoint "python3"
	-e BIFROST_DB_KEY=${{ secrets.MONGODB_ATLAS_CONNECTION }}/bifrost_test
	${{ github.event.repository.name }}
	-m pytest

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