Skip to content

Commit

Permalink
Update README.md fix typo
Browse files Browse the repository at this point in the history
  • Loading branch information
starskyzheng authored Apr 9, 2024
1 parent 96ae42a commit e01c267
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion README.md
Original file line number Diff line number Diff line change
Expand Up @@ -187,7 +187,7 @@ cpanm Data::Dumper MCE::Flow MCE::Candy MCE::Channel MCE::Shared Getopt::Long Li

If you needs to process NGS data by using TGS SVs generated by PanPop (in VCF format), this process is necessary. Noted this process will increase multi-allelic. Usage: `perl scripts/prase_vcf_rm_asterisk.pl --infile IN.vcf.gz -r REF.fa -o OUT1.vcf.gz`.

Then using VG to consturct gfa file: `vg consturct -r REF.fa -v OUT1.vcf.gz -t 4 > OUT2.vg; vg view --vg-in --gfa OUT2.vg > OUT3.gfa`.
Then using VG to consturct gfa file: `vg construct -r REF.fa -v OUT1.vcf.gz -t 4 > OUT2.vg; vg view --vg-in --gfa OUT2.vg > OUT3.gfa`.

## <a name=cite></a>Citations
Zheng, Z. et al. A sequence-aware merger of genomic structural variations at population scale. Nat Commun (2024). https://doi.org/10.1038/s41467-024-45244-9
Expand Down

0 comments on commit e01c267

Please sign in to comment.