Merge branch 'release/0.1.7'

statgen · Dec 19, 2019 · 0514797 · 0514797
2 parents c5ecc68 + c69cc51
commit 0514797
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/locuszoom_plotting_service/taskapp/tasks.py b/locuszoom_plotting_service/taskapp/tasks.py
@@ -122,7 +122,7 @@ def summarize_gwas(self, instance: models.AnalysisFileset):
         gwas=instance.metadata,
         label='Top hit',
         chrom=best_row.chrom,
-        start=best_row.pos - 250_000,
+        start=max(best_row.pos - 250_000, 1),
         end=best_row.pos + 250_000
     )
     instance.metadata.top_hit_view = top_hit

diff --git a/locuszoom_plotting_service/templates/gwas/gwas_summary.html b/locuszoom_plotting_service/templates/gwas/gwas_summary.html
@@ -150,7 +150,7 @@ <h3>QQ Plot:</h3>
     // Required as hardcoded global reference in PheWeb pheno.js
     window.model = {
       urlprefix: '{% filter add_token:token %}{% url 'gwas:region' gwas.slug %}{% endfilter %}',
-      tooltip_underscoretemplate: '<b><%- d.chrom %>:<%- d.pos.toLocaleString() %> <%- d.ref %> / <%- d.alt %></b><br>-log<sub>10</sub>(p): <%- d.neg_log_pvalue && d.neg_log_pvalue.toFixed(3) %><br>Nearest gene(s): <%- d.nearest_genes && d.nearest_genes.length && d.nearest_genes.map(function(gene) { return gene.symbol; }).join(", ") %>'
+      tooltip_underscoretemplate: '<b><%- d.chrom %>:<%- d.pos.toLocaleString() %> <%- d.ref %> / <%- d.alt %></b><br>-log<sub>10</sub>(p): <%- d.neg_log_pvalue && (+d.neg_log_pvalue).toFixed(3) %><br>Nearest gene(s): <%- d.nearest_genes && d.nearest_genes.length && d.nearest_genes.map(function(gene) { return gene.symbol; }).join(", ") %>'
     };
     window.pheno = '';
   </script>