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@stephenslab

Stephens lab

Research in statistical and computational methods for genetics at the University of Chicago.

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  1. susieR susieR Public

    R package for "sum of single effects" regression.

    R 182 47

  2. mashr mashr Public

    An R package for multivariate adaptive shrinkage.

    R 88 19

  3. flashr flashr Public

    R package for Empirical Bayes Factor Analysis.

    R 49 11

  4. fastTopics fastTopics Public

    Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.

    R 77 7

  5. ebnm ebnm Public

    R package to fit Empirical Bayes Normal Means model.

    R 12 9

  6. dsc dsc Public

    Repo for Dynamic Statistical Comparisons project

    HTML 12 12

Repositories

Showing 10 of 101 repositories
  • mr.mash.alpha Public

    R package implementing methods for multivariate multiple regression with adaptive shrinkage priors.

    stephenslab/mr.mash.alpha’s past year of commit activity
    R 4 3 0 0 Updated Nov 22, 2024
  • gradvi Public

    Gradient descent methods for Bayesian variational inference with mean field approximation.

    stephenslab/gradvi’s past year of commit activity
    Python 6 MIT 0 0 0 Updated Nov 14, 2024
  • fsusieR Public

    Draft package for "Sum of Single Functions" method.

    stephenslab/fsusieR’s past year of commit activity
    R 2 1 4 0 Updated Nov 11, 2024
  • mashr Public

    An R package for multivariate adaptive shrinkage.

    stephenslab/mashr’s past year of commit activity
    R 88 19 57 0 Updated Nov 7, 2024
  • fastTopics Public

    Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.

    stephenslab/fastTopics’s past year of commit activity
    R 77 7 13 1 Updated Nov 5, 2024
  • gbcd Public

    R package for generalized binary covariance decomposition.

    stephenslab/gbcd’s past year of commit activity
    R 1 0 2 0 Updated Oct 11, 2024
  • gbcd-workflow Public

    GBCD analyses of scRNA-seq data from malignant cells.

    stephenslab/gbcd-workflow’s past year of commit activity
    HTML 2 MIT 1 2 1 Updated Sep 25, 2024
  • rss Public

    RSS: Regression with Summary Statistics

    stephenslab/rss’s past year of commit activity
    MATLAB 50 MIT 11 0 1 Updated Sep 16, 2024
  • fastglmpca Public

    Fast algorithms for GLM-PCA.

    stephenslab/fastglmpca’s past year of commit activity
    HTML 11 GPL-2.0 0 2 0 Updated Aug 23, 2024
  • fastTopics-experiments Public

    Numerical experiments on fitting non-negative matrix factorizations and topic models.

    stephenslab/fastTopics-experiments’s past year of commit activity
    R 1 MIT 1 0 0 Updated Aug 22, 2024