Skip to content

Latest commit

 

History

History
101 lines (98 loc) · 2.45 KB

README.md

File metadata and controls

101 lines (98 loc) · 2.45 KB
Raw

Circos brain

Visualize brain connections using Circos

This bit of code and data allows for the visualization of white matter connections in the brain. The brain lobes are color coded. The brain regions used are based on the Automated Anatomical Labeling (AAL). N. Tzourio-Mazoyer, B. Landeau, D. Papathanassiou, F. Crivello, O. Etard, N. Delcroix, Bernard Mazoyer, M. Joliot (2002). "Automated anatomical labeling of activations in SPM using a macroscopic anatomical parcellation of the MNI MRI single-subject brain". NeuroImage 15: 273-289. https://www.sciencedirect.com/science/article/pii/S1053811901909784?via%3Dihub

Regions include;

  1. Precentral_L
  2. Precentral_R
  3. Frontal_Sup_L
  4. Frontal_Sup_R
  5. Frontal_Sup_Orb_L
  6. Frontal_Sup_Orb_R
  7. Frontal_Mid_L
  8. Frontal_Mid_R
  9. Frontal_Mid_Orb_L
  10. Frontal_Mid_Orb_R
  11. Frontal_Inf_Oper_L
  12. Frontal_Inf_Oper_R
  13. Frontal_Inf_Tri_L
  14. Frontal_Inf_Tri_R
  15. Frontal_Inf_Orb_L
  16. Frontal_Inf_Orb_R
  17. Rolandic_Oper_L
  18. Rolandic_Oper_R
  19. Supp_Motor_Area_L
  20. Supp_Motor_Area_R
  21. Olfactory_L
  22. Olfactory_R
  23. Frontal_Sup_Medial_L
  24. Frontal_Sup_Medial_R
  25. Frontal_Med_Orb_L
  26. Frontal_Med_Orb_R
  27. Rectus_L
  28. Rectus_R
  29. Insula_L
  30. Insula_R
  31. Cingulum_Ant_L
  32. Cingulum_Ant_R
  33. Cingulum_Mid_L
  34. Cingulum_Mid_R
  35. Cingulum_Post_L
  36. Cingulum_Post_R
  37. Hippocampus_L
  38. Hippocampus_R
  39. ParaHippocampal_L
  40. ParaHippocampal_R
  41. Amygdala_L
  42. Amygdala_R
  43. Calcarine_L
  44. Calcarine_R
  45. Cuneus_L
  46. Cuneus_R
  47. Lingual_L
  48. Lingual_R
  49. Occipital_Sup_L
  50. Occipital_Sup_R
  51. Occipital_Mid_L
  52. Occipital_Mid_R
  53. Occipital_Inf_L
  54. Occipital_Inf_R
  55. Fusiform_L
  56. Fusiform_R
  57. Postcentral_L
  58. Postcentral_R
  59. Parietal_Sup_L
  60. Parietal_Sup_R
  61. Parietal_Inf_L
  62. Parietal_Inf_R
  63. SupraMarginal_L
  64. SupraMarginal_R
  65. Angular_L
  66. Angular_R
  67. Precuneus_L
  68. Precuneus_R
  69. Paracentral_Lobule_L
  70. Paracentral_Lobule_R
  71. Caudate_L
  72. Caudate_R
  73. Putamen_L
  74. Putamen_R
  75. Pallidum_L
  76. Pallidum_R
  77. Thalamus_L
  78. Thalamus_R
  79. Heschl_L
  80. Heschl_R
  81. Temporal_Sup_L
  82. Temporal_Sup_R
  83. Temporal_Pole_Sup_L
  84. Temporal_Pole_Sup_R
  85. Temporal_Mid_L
  86. Temporal_Mid_R
  87. Temporal_Pole_Mid_L
  88. Temporal_Pole_Mid_R
  89. Temporal_Inf_L
  90. Temporal_Inf_R

Note; Frontal_Med_Orb_L and Frontal_Med_Orb_R was called Frontal_Mid_Orb_L and Frontal_Mid_Orb_R previously Check the Brede Wiki for more detail; http://neuro.imm.dtu.dk/wiki/Automated_Anatomical_Labeling