Circos brain

Visualize brain connections using Circos

This bit of code and data allows for the visualization of white matter connections in the brain. The brain lobes are color coded. The brain regions used are based on the Automated Anatomical Labeling (AAL). N. Tzourio-Mazoyer, B. Landeau, D. Papathanassiou, F. Crivello, O. Etard, N. Delcroix, Bernard Mazoyer, M. Joliot (2002). "Automated anatomical labeling of activations in SPM using a macroscopic anatomical parcellation of the MNI MRI single-subject brain". NeuroImage 15: 273-289. https://www.sciencedirect.com/science/article/pii/S1053811901909784?via%3Dihub

Regions include;

1. Precentral_L
2. Precentral_R
3. Frontal_Sup_L
4. Frontal_Sup_R
5. Frontal_Sup_Orb_L
6. Frontal_Sup_Orb_R
7. Frontal_Mid_L
8. Frontal_Mid_R
9. Frontal_Mid_Orb_L
10. Frontal_Mid_Orb_R
11. Frontal_Inf_Oper_L
12. Frontal_Inf_Oper_R
13. Frontal_Inf_Tri_L
14. Frontal_Inf_Tri_R
15. Frontal_Inf_Orb_L
16. Frontal_Inf_Orb_R
17. Rolandic_Oper_L
18. Rolandic_Oper_R
19. Supp_Motor_Area_L
20. Supp_Motor_Area_R
21. Olfactory_L
22. Olfactory_R
23. Frontal_Sup_Medial_L
24. Frontal_Sup_Medial_R
25. Frontal_Med_Orb_L
26. Frontal_Med_Orb_R
27. Rectus_L
28. Rectus_R
29. Insula_L
30. Insula_R
31. Cingulum_Ant_L
32. Cingulum_Ant_R
33. Cingulum_Mid_L
34. Cingulum_Mid_R
35. Cingulum_Post_L
36. Cingulum_Post_R
37. Hippocampus_L
38. Hippocampus_R
39. ParaHippocampal_L
40. ParaHippocampal_R
41. Amygdala_L
42. Amygdala_R
43. Calcarine_L
44. Calcarine_R
45. Cuneus_L
46. Cuneus_R
47. Lingual_L
48. Lingual_R
49. Occipital_Sup_L
50. Occipital_Sup_R
51. Occipital_Mid_L
52. Occipital_Mid_R
53. Occipital_Inf_L
54. Occipital_Inf_R
55. Fusiform_L
56. Fusiform_R
57. Postcentral_L
58. Postcentral_R
59. Parietal_Sup_L
60. Parietal_Sup_R
61. Parietal_Inf_L
62. Parietal_Inf_R
63. SupraMarginal_L
64. SupraMarginal_R
65. Angular_L
66. Angular_R
67. Precuneus_L
68. Precuneus_R
69. Paracentral_Lobule_L
70. Paracentral_Lobule_R
71. Caudate_L
72. Caudate_R
73. Putamen_L
74. Putamen_R
75. Pallidum_L
76. Pallidum_R
77. Thalamus_L
78. Thalamus_R
79. Heschl_L
80. Heschl_R
81. Temporal_Sup_L
82. Temporal_Sup_R
83. Temporal_Pole_Sup_L
84. Temporal_Pole_Sup_R
85. Temporal_Mid_L
86. Temporal_Mid_R
87. Temporal_Pole_Mid_L
88. Temporal_Pole_Mid_R
89. Temporal_Inf_L
90. Temporal_Inf_R

Note; Frontal_Med_Orb_L and Frontal_Med_Orb_R was called Frontal_Mid_Orb_L and Frontal_Mid_Orb_R previously Check the Brede Wiki for more detail; http://neuro.imm.dtu.dk/wiki/Automated_Anatomical_Labeling