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St. Jude Children's Research Hospital

Finding Cures, Saving Children.

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  1. learngenomics.dev learngenomics.dev Public

    A guided, intuitive introduction to genomics for software engineers. Curated by the community.

    JavaScript 351 32

  2. ROSE ROSE Public

    ROSE: RANK ORDERING OF SUPER-ENHANCERS

    Python 43 12

  3. CICERO CICERO Public

    CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.

    Perl 35 19

  4. ChIPseqSpikeInFree ChIPseqSpikeInFree Public

    A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications

    R 31 13

  5. RNAIndel RNAIndel Public

    Somatic indel discovery tool for tumor RNA-Seq data.

    Python 21 9

  6. proteinpaint proteinpaint Public

    Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.

    JavaScript 21 5

Repositories

Showing 10 of 45 repositories
  • proteinpaint Public

    Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.

    stjude/proteinpaint’s past year of commit activity
    JavaScript 21 5 88 (4 issues need help) 4 Updated Dec 24, 2024
  • seaseq Public

    Abraham's lab - ChipSeq Pipeline

    stjude/seaseq’s past year of commit activity
    WDL 6 Apache-2.0 5 0 0 Updated Dec 2, 2024
  • XenoCP Public

    A cloud-based tool for mouse read cleansing in xenograft samples

    stjude/XenoCP’s past year of commit activity
    Shell 5 Apache-2.0 3 0 1 Updated Nov 1, 2024
  • stjude/Mouse_Survival’s past year of commit activity
    Jupyter Notebook 0 MIT 1 1 0 Updated Sep 13, 2024
  • learngenomics.dev Public

    A guided, intuitive introduction to genomics for software engineers. Curated by the community.

    stjude/learngenomics.dev’s past year of commit activity
    JavaScript 351 32 7 3 Updated Aug 25, 2024
  • RNApeg Public

    RNA junction finder

    stjude/RNApeg’s past year of commit activity
    Perl 3 Apache-2.0 2 1 0 Updated Aug 22, 2024
  • BOUQUET Public
    stjude/BOUQUET’s past year of commit activity
    R 0 GPL-2.0 0 0 0 Updated Aug 14, 2024
  • ROSE Public

    ROSE: RANK ORDERING OF SUPER-ENHANCERS

    stjude/ROSE’s past year of commit activity
    Python 43 12 2 0 Updated Aug 2, 2024
  • dab_detector Public

    Scripts and classes for DAB plaque detection

    stjude/dab_detector’s past year of commit activity
    MATLAB 0 GPL-2.0 0 0 0 Updated Apr 5, 2024
  • DeepBrainIPP Public

    Automated Brain Structures Segmentation Framework

    stjude/DeepBrainIPP’s past year of commit activity
    Python 7 Apache-2.0 3 0 1 Updated Mar 22, 2024

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