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jhollway committed Oct 23, 2024
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# manynet 1.3.0

## Package

- Improved user information in the console
- manynet cli functions now inherit parent frame
- Added manynet cli functions for success and progress along, seq, and nodes
- Improved testing architecture
- Moving to nested testthats
- Added custom testthat function for expecting values and ignoring dimension names

## Making

- Added some names to created networks (`create_ego()`, `create_empty()`,
`create_filled()`, `create_ring()`, `create_star()`, `create_lattice()`)

## Modifying

- Fixed how `as_matrix()` handles signed networks
- Added `as_nodelist()` for extracting nodelists from networks into tibbles
- Added `to_cosine()`
- Dropped `to_galois()` until it can be refactored
- Split reformatting documentation into format, reformat, and deformat groups of functions
- Added `to_signed()` for adding signs to networks
- Added `to_weighted()` for adding weights to networks

## Mapping

- Fixed default color ordering so that red is the highlight
- Fixed bug in `graphr()` where line types were inferred incorrectly
- Improved `graphr()` so that layouts can now be `snap`ped to a grid,
mileage may vary
- Improved theme handling so that it is set globally (WIP)
- Added highlight themes
- Added background themes
- Added categorical themes
- Improved configurational layouts
- Added dyad, pentad, and hexad layouts to configurational layouts
- Renamed quad layout to tetrad layout

## Marking

- Added `node_is_pendant()` for identifying pendant nodes
- Added `node_is_neighbor()` for identifying adjacent nodes
- Added `tie_is_imbalanced()` for identifying ties in imbalanced configurations

## Measuring

- Added `summary.network_measure()` to return z-scores and p-values for measures
- Added `node_vitality()` for measuring closeness vitality centrality
- Fixed #98 by dropping scale and normalization for `node_eigenvector()`

## Memberships

- Improved community detection options for new users
- Community detection algorithms now reformat networks as necessary or suggest that it be used on only the giant component
- Added `node_in_community()` which runs through most salient community detection algorithms to find and return the one with the highest modularity
- Updated documentation on resolution parameters
- Improved `node_in_regular()` to inform user which census is being used
- Renamed `node_by_quad()` to `node_by_tetrad()` to be more consistent with Greek origins
- Restored and updated documentation about the various configurations
- Added `summary.network_motif()` which returns the z-scores for the motif scores based on random or configurational networks, traces progress
- Fixed bug in `plot.network_motif()` where motif names were not identified correctly, internal make_network_motif now inherits call information

## Modelling

- Added `cluster_cosine()` for another equivalence option
- Added internal documentation for depth_first_recursive_search

## Practicing

- Improved how `run_tute()` fuzzy matched so that insertions are not as costly
- Improved tutorials with glossary architecture
- Added `gloss()`, `clear_glossary()`, and `print_glossary()` for adding glossaries to tutorials
- Updated tutorials
- Updated community, position, and topology tutorials with glossaries, free play sections, and gifs
- Fixed miscellaneous issues in these tutorials
- Added faction section to community tutorial

## Data

- Added `irps_wwi`, a dynamic, signed network
- Renamed `ison_blogs` to `irps_blogs`, added info
- Renamed `ison_books` to `irps_books`, added info
- Renamed `ison_usstates` to `irps_usgeo`, added info
- Renamed `ison_friends` to `fict_friends`, added info and fixed directed issue
- Renamed `ison_greys` to `fict_greys`, added info
- Renamed `ison_lotr` to `fict_lotr`, added info
- Renamed `ison_thrones` to `fict_thrones`, added info and some additional nodal attributes

# manynet 1.2.6

## Package
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