Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Switch from single fat ocrd_all image to many slim images in the HPC #20

Merged
merged 16 commits into from
Dec 2, 2024
Merged

Switch from single fat ocrd_all image to many slim images in the HPC #20

merged 16 commits into from
Dec 2, 2024

Commits on Nov 12, 2024

  1. pass json args to the ssh hpc calls

    @MehmedGIT
    MehmedGIT committed Nov 12, 2024
    Configuration menu
    Copy the full SHA
    d78c8fd View commit details
    Browse the repository at this point in the history

  2. clean: remove redundant comments

    @MehmedGIT
    MehmedGIT committed Nov 12, 2024
    Configuration menu
    Copy the full SHA
    17c15f6 View commit details
    Browse the repository at this point in the history

Commits on Nov 24, 2024

  1. another portion of changes to slim containers

    @MehmedGIT
    MehmedGIT committed Nov 24, 2024
    Configuration menu
    Copy the full SHA
    5caaa98 View commit details
    Browse the repository at this point in the history

Commits on Nov 26, 2024

  1. add executable to image mapping

    @MehmedGIT
    MehmedGIT committed Nov 26, 2024
    Configuration menu
    Copy the full SHA
    7317db3 View commit details
    Browse the repository at this point in the history

  2. remove unnecessary dummy images

    @MehmedGIT
    MehmedGIT committed Nov 26, 2024
    Configuration menu
    Copy the full SHA
    2683455 View commit details
    Browse the repository at this point in the history

  3. OtoN: assigns different wrappers per step

    @MehmedGIT
    MehmedGIT committed Nov 26, 2024
    Configuration menu
    Copy the full SHA
    1f0e1ee View commit details
    Browse the repository at this point in the history

Commits on Nov 29, 2024

  1. fix: oton convert endpoint test

    @MehmedGIT
    MehmedGIT committed Nov 29, 2024
    Configuration menu
    Copy the full SHA
    3762a5f View commit details
    Browse the repository at this point in the history

  2. fix: checking whether a nf script uses mets server

    @MehmedGIT
    MehmedGIT committed Nov 29, 2024
    Configuration menu
    Copy the full SHA
    f979180 View commit details
    Browse the repository at this point in the history

  3. another big portion of working changes

    @MehmedGIT
    MehmedGIT committed Nov 29, 2024
    Configuration menu
    Copy the full SHA
    c66fcde View commit details
    Browse the repository at this point in the history

  4. add: extra logging when oton converting

    @MehmedGIT
    MehmedGIT committed Nov 29, 2024
    Configuration menu
    Copy the full SHA
    b3e7026 View commit details
    Browse the repository at this point in the history

  5. fix: processor executables entry in the DBWorkflow

    @MehmedGIT
    MehmedGIT committed Nov 29, 2024
    Configuration menu
    Copy the full SHA
    3a56588 View commit details
    Browse the repository at this point in the history

  6. fix: slim containers solution

    @MehmedGIT
    MehmedGIT committed Nov 29, 2024
    Configuration menu
    Copy the full SHA
    24be118 View commit details
    Browse the repository at this point in the history

Commits on Dec 2, 2024

  1. refactor: slim images switch

    @MehmedGIT
    MehmedGIT committed Dec 2, 2024
    Configuration menu
    Copy the full SHA
    3a20a9a View commit details
    Browse the repository at this point in the history

  2. add: info print on oton produced wfs

    @MehmedGIT
    MehmedGIT committed Dec 2, 2024
    Configuration menu
    Copy the full SHA
    5177e12 View commit details
    Browse the repository at this point in the history

  3. used dict for nf_params

    @MehmedGIT
    MehmedGIT committed Dec 2, 2024
    Configuration menu
    Copy the full SHA
    172474d View commit details
    Browse the repository at this point in the history

  4. fix: operandi_utils setup

    @MehmedGIT
    MehmedGIT committed Dec 2, 2024
    Configuration menu
    Copy the full SHA
    602636e View commit details
    Browse the repository at this point in the history