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Source  : ed8bc7d
Branch  : main
Author  : Toby Hodges <tbyhdgs@gmail.com>
Time    : 2024-06-11 09:47:04 +0000
Message : Merge pull request #892 from swcarpentry/update/packages

Update 12 packages

02-project-intro.md

@@ -185,33 +185,33 @@ shell to answer the following questions:
 By running these commands in the shell:
 
 
-```sh
+``` sh
 ls -lh data/gapminder_data.csv
 ```
 
-```output
--rw-r--r-- 1 runner docker 80K May 21 00:17 data/gapminder_data.csv
+``` output
+-rw-r--r-- 1 runner docker 80K Jun 11 09:50 data/gapminder_data.csv
 ```
 
 The file size is 80K.
 
 
-```sh
+``` sh
 wc -l data/gapminder_data.csv
 ```
 
-```output
+``` output
 1705 data/gapminder_data.csv
 ```
 
 There are 1705 lines. The data looks like:
 
 
-```sh
+``` sh
 head data/gapminder_data.csv
 ```
 
-```output
+``` output
 country,year,pop,continent,lifeExp,gdpPercap
 Afghanistan,1952,8425333,Asia,28.801,779.4453145
 Afghanistan,1957,9240934,Asia,30.332,820.8530296

03-seeking-help.md

@@ -28,15 +28,15 @@ function, "function\_name", from a specific function that is in a package loaded
 namespace (your interactive R session) is:
 
 
-```r
+``` r
 ?function_name
 help(function_name)
 ```
 
 For example take a look at the help file for `write.table()`, we will be using a similar function in an upcoming episode.
 
 
-```r
+``` r
 ?write.table()
 ```
 
@@ -57,7 +57,7 @@ Different functions might have different sections, but these are the main ones y
 Notice how related functions might call for the same help file:
 
 
-```r
+``` r
 ?write.table()
 ?write.csv()
 ```
@@ -93,7 +93,7 @@ means you don't have to remember that!
 To seek help on special operators, use quotes or backticks:
 
 
-```r
+``` r
 ?"<-"
 ?`<-`
 ```
@@ -116,15 +116,15 @@ RStudio also has a set of excellent
 If you're not sure what package a function is in or how it's specifically spelled, you can do a fuzzy search:
 
 
-```r
+``` r
 ??function_name
 ```
 
 A fuzzy search is when you search for an approximate string match. For example, you may remember that the function
 to set your working directory includes "set" in its name. You can do a fuzzy search to help you identify the function:
 
 
-```r
+``` r
 ??set
 ```
 
@@ -147,19 +147,19 @@ If you can't find the answer, there are a few useful functions to
 help you ask your peers:
 
 
-```r
+``` r
 ?dput
 ```
 
 Will dump the data you're working with into a format that can
 be copied and pasted by others into their own R session.
 
 
-```r
+``` r
 sessionInfo()
 ```
 
-```output
+``` output
 R version 4.4.0 (2024-04-24)
 Platform: x86_64-pc-linux-gnu
 Running under: Ubuntu 22.04.4 LTS
@@ -181,7 +181,7 @@ attached base packages:
 [1] stats     graphics  grDevices utils     datasets  methods   base     
 
 loaded via a namespace (and not attached):
-[1] compiler_4.4.0 tools_4.4.0    yaml_2.3.8     knitr_1.46     xfun_0.43     
+[1] compiler_4.4.0 tools_4.4.0    yaml_2.3.8     knitr_1.47     xfun_0.44     
 [6] renv_1.0.7     evaluate_0.23 
 ```
 
@@ -197,7 +197,7 @@ Look at the help page for the `c` function. What kind of vector do you
 expect will be created if you evaluate the following:
 
 
-```r
+``` r
 c(1, 2, 3)
 c('d', 'e', 'f')
 c(1, 2, 'f')
@@ -232,7 +232,7 @@ What's the difference between the `sep` and `collapse` arguments?
 To look at the help for the `paste()` function, use:
 
 
-```r
+``` r
 help("paste")
 ?paste
 ```
@@ -251,43 +251,43 @@ separator and not a term to concatenate.
 e.g.
 
 
-```r
+``` r
 paste(c("a","b"), "c")
 ```
 
-```output
+``` output
 [1] "a c" "b c"
 ```
 
-```r
+``` r
 paste(c("a","b"), "c", ",")
 ```
 
-```output
+``` output
 [1] "a c ," "b c ,"
 ```
 
-```r
+``` r
 paste(c("a","b"), "c", sep = ",")
 ```
 
-```output
+``` output
 [1] "a,c" "b,c"
 ```
 
-```r
+``` r
 paste(c("a","b"), "c", collapse = "|")
 ```
 
-```output
+``` output
 [1] "a c|b c"
 ```
 
-```r
+``` r
 paste(c("a","b"), "c", sep = ",", collapse = "|")
 ```
 
-```output
+``` output
 [1] "a,c|b,c"
 ```