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0.3.0
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@daemontus daemontus released this 16 Feb 20:14
· 1 commit to 0.3.0 since this release
v0.3.0
6975620

This release focuses on stability and performance improvements. Specifically:

  • We now use the stable version 0.1.0 of biodivine-lib-param-bn. This brings additional improvements (compared to 0.2.0) in the SBML parser, as well as other bugfixes and API improvements.
  • This is the first version to use fully symbolic representation of asynchronous graphs.
  • Internal algorithms have been significantly improved to a point where we can handle any fully instantiated real-world network that we know of. Large parameterized models (20+ variables) can expect several orders of magnitude speed-up as well.
  • Progress tracking and cancellation support during computation have been reworked and should be more reliable.
  • We show a two-state approximation for large attractors that cannot be otherwise visualized.
  • Adding Github Actions build check. In the future we should really consider the option to automatically build artifacts for releases using Github Actions.
  • We incorporate a large (125+) collection of real world models that can be used for testing (already used in biodivine-lib-param-bn for differential SBML testing) and benchmarking (includes simple python scripts to run such benchmakrs). The integrity of the benchmark set is validated using a custom rust executable.
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