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@szczurek-lab

Ewa Szczurek lab

Methods developed in Ewa Szczurek's lab

Popular repositories Loading

  1. hydramp hydramp Public

    HydrAMP: a deep generative model for antimicrobial peptide discovery

    Jupyter Notebook 42 11

  2. Celloscope Celloscope Public

    Celloscope: a probabilistic model for marker-gene-driven cell type deconvolution in spatial transcriptomics data

    Jupyter Notebook 5 1

  3. SIEVE SIEVE Public

    Joint inference of single-nucleotide variants and cell phylogeny from scDNA-seq.

    Java 4 1

  4. DataFilter DataFilter Public

    Selecting candidate single-nucleotide variant sites with read counts for SIEVE.

    C++ 3 1

  5. SIEVE_benchmark_pipeline SIEVE_benchmark_pipeline Public

    Benchmarking framework for SIEVE.

    Python 3

  6. Tumoroscope Tumoroscope Public

    HTML 3

Repositories

Showing 10 of 20 repositories
  • ST-Assign Public

    ST-Assign

    szczurek-lab/ST-Assign’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Jan 22, 2025
  • hydramp Public

    HydrAMP: a deep generative model for antimicrobial peptide discovery

    szczurek-lab/hydramp’s past year of commit activity
    Jupyter Notebook 42 MIT 11 2 0 Updated Nov 26, 2024
  • RetMol Public Forked from NVlabs/RetMol

    A new retrieval-based framework for controllable molecule generation.

    szczurek-lab/RetMol’s past year of commit activity
    Python 0 4 0 0 Updated Sep 30, 2024
  • CaClust Public
    szczurek-lab/CaClust’s past year of commit activity
    R 1 GPL-3.0 0 0 0 Updated Sep 30, 2024
  • SIEVE Public

    Joint inference of single-nucleotide variants and cell phylogeny from scDNA-seq.

    szczurek-lab/SIEVE’s past year of commit activity
    Java 4 GPL-3.0 1 1 0 Updated Jun 9, 2024
  • DataFilter Public

    Selecting candidate single-nucleotide variant sites with read counts for SIEVE.

    szczurek-lab/DataFilter’s past year of commit activity
    C++ 3 GPL-3.0 1 0 0 Updated Jun 8, 2024
  • Tumoroscope Public
    szczurek-lab/Tumoroscope’s past year of commit activity
    HTML 3 GPL-3.0 0 0 0 Updated Jan 30, 2024
  • condot Public Forked from bunnech/condot

    Supervised Training of Conditional Monge Maps

    szczurek-lab/condot’s past year of commit activity
    Jupyter Notebook 0 MIT 5 0 0 Updated Oct 30, 2023
  • Celloscope Public

    Celloscope: a probabilistic model for marker-gene-driven cell type deconvolution in spatial transcriptomics data

    szczurek-lab/Celloscope’s past year of commit activity
    Jupyter Notebook 5 GPL-3.0 1 1 0 Updated Sep 13, 2023
  • qupath-spot-utils Public

    Scripts for processing microarray spots in QuPath

    szczurek-lab/qupath-spot-utils’s past year of commit activity
    Groovy 2 GPL-3.0 0 1 0 Updated Sep 10, 2023

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