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@talmolab

Talmo Lab at the Salk Institute

Talmo Pereira's research group at the Salk Institute for Biological Studies.

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  1. sleap sleap Public

    A deep learning framework for multi-animal pose tracking.

    Python 414 95

  2. sleap-io sleap-io Public

    Standalone utilities for SLEAP pose tracking data.

    Python 11 8

  3. sleap-anipose sleap-anipose Public

    SLEAP to Anipose triangulation pipeline for 3D multi-animal pose tracking.

    Python 16

  4. sleap-roots sleap-roots Public

    Analysis tools for SLEAP-based plant root phenotyping.

    Python 8

  5. dreem dreem Public

    DREEM Relates Every Entities' Motion (DREEM). Global Tracking Transformers for biological multi-object tracking.

    Python 7 1

Repositories

Showing 10 of 43 repositories
  • dreem Public

    DREEM Relates Every Entities' Motion (DREEM). Global Tracking Transformers for biological multi-object tracking.

    talmolab/dreem’s past year of commit activity
    Python 7 BSD-3-Clause 1 11 2 Updated Aug 8, 2024
  • flybody Public Forked from TuragaLab/flybody

    MuJoCo fruit fly body model and reinforcement learning tasks

    talmolab/flybody’s past year of commit activity
    Python 0 Apache-2.0 7 0 0 Updated Aug 8, 2024
  • sleap-nn Public

    Neural network backend for training and inference for animal pose estimation.

    talmolab/sleap-nn’s past year of commit activity
    Python 4 GPL-3.0 0 12 4 Updated Aug 8, 2024
  • sleap Public

    A deep learning framework for multi-animal pose tracking.

    talmolab/sleap’s past year of commit activity
    Python 414 95 76 (4 issues need help) 26 Updated Aug 7, 2024
  • sleap-io Public

    Standalone utilities for SLEAP pose tracking data.

    talmolab/sleap-io’s past year of commit activity
    Python 11 BSD-3-Clause 8 9 5 Updated Aug 7, 2024
  • stac-mjx Public

    Implementation of STAC using MJX for GPU acceleration. Part of VNL project.

    talmolab/stac-mjx’s past year of commit activity
    Jupyter Notebook 2 BSD-3-Clause 0 19 1 Updated Aug 6, 2024
  • sleap-anipose Public

    SLEAP to Anipose triangulation pipeline for 3D multi-animal pose tracking.

    talmolab/sleap-anipose’s past year of commit activity
    Python 16 GPL-3.0 0 10 0 Updated Jul 26, 2024
  • multi-animal-dannce Public Forked from tqxli/dannce-pytorch
    talmolab/multi-animal-dannce’s past year of commit activity
    Jupyter Notebook 0 MIT 2 0 0 Updated Jul 23, 2024
  • VNL-Brax-Imitation Public

    VNL Implementation of Rodent Imitation Learning

    talmolab/VNL-Brax-Imitation’s past year of commit activity
    Jupyter Notebook 2 1 0 0 Updated Jul 18, 2024
  • sleap-deps Public

    Packages necessary for sleap build maintained by the SLEAP team.

    talmolab/sleap-deps’s past year of commit activity
    0 Apache-2.0 0 0 2 Updated Jul 18, 2024
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