A collection of light bioinformatics analysis pipelines for specific tasks.
- Synonymous calculation
- Blast nearby (given anchors, BLAST around local regions, useful for finding CNS)
- Lastz wrapper (print BLAST-tabular output, also parallelize the calculation)
- BioMart connector for Python
- Performing statistical test for gap deletion models
- Print feature sequences given GFF file and FASTA file (e.g. extracting CDS sequences)
Dive into specific folder to view more detailed usage on each application.