Reduce fastp threads

tdayris · Jul 22, 2024 · c38d2d5 · c38d2d5
1 parent 4d4aa21
commit c38d2d5
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflow/rules/fastp.smk b/workflow/rules/fastp.smk
@@ -38,7 +38,7 @@ rule fair_bowtie2_mapping_fastp_trimming_pair_ended:
         json=temp(
             "tmp/fair_bowtie2_mapping_fastp_trimming_pair_ended/{sample}.fastp.json"
         ),
-    threads: 20
+    threads: 6
     resources:
         mem_mb=lambda wildcards, attempt: 3_000 + (1_000 * attempt),
         runtime=lambda wildcards, attempt: 15 * attempt,