Common Workflow Languange R

R classes mapped to CWL, enable OOP, with utils like JSON/YAML converter

Reference please check draft2

Install

Please pay attention that the github project name is NOT cwl, but `cwl.R'

From github

Directly install from github, need to install Bioc dependency first.

source("http://bioconductor.org/biocLite.R")
biocLite("S4Vectors")

library(devtools)
install_github('tengfei/cwl.R')

From Bioconductor

When it's on Bioconductor, to install released version

source("http://bioconductor.org/biocLite.R")
biocLite("cwl")

To install developmental version

source("http://bioconductor.org/biocLite.R")
useDevel()
biocLite("cwl")

Use the package

To load the pacakges

library(cwl)

To read the vignette

vignette("cwl-intro")