Merge pull request #168 from thackl/cran-ready #91
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on: | |
push: | |
branches: master | |
name: pkgdown | |
jobs: | |
pkgdown: | |
runs-on: ubuntu-latest | |
env: | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
steps: | |
- uses: actions/checkout@v2 | |
- uses: r-lib/actions/setup-r@v2 | |
with: | |
r-version: 4.3.1 | |
- uses: r-lib/actions/setup-pandoc@v2 | |
- name: Install dependencies | |
run: | | |
sudo apt-get install --yes libcurl4-openssl-dev libharfbuzz-dev libfribidi-dev | |
- name: Install XQuartz | |
if: runner.os == 'macOS' | |
run: brew cask install xquartz | |
- name: Query dependencies | |
run: | | |
install.packages('remotes') | |
saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
shell: Rscript {0} | |
- name: Cache R packages | |
uses: actions/cache@v1 | |
with: | |
path: ${{ env.R_LIBS_USER }} | |
key: ubuntu-r-4.0-4-${{ hashFiles('.github/depends.Rds') }} | |
restore-keys: ubuntu-r-4.0-4- | |
- name: Install dependencies | |
run: | | |
install.packages("BiocManager") | |
BiocManager::install("IRanges") | |
BiocManager::install("ggtree") | |
install.packages("remotes") | |
remotes::install_deps(dependencies = TRUE) | |
install.packages('pkgdown') | |
install.packages('devtools') | |
remotes::install_dev("dplyr") | |
install.packages("Hmisc") | |
shell: Rscript {0} | |
- name: Install package | |
run: R CMD INSTALL . | |
- name: Session Info | |
run: | | |
library(tidyverse) | |
library(IRanges) | |
library(gggenomes) | |
print(sessionInfo()) | |
shell: Rscript {0} | |
# - name: Setup upterm session | |
# uses: lhotari/action-upterm@v1 | |
- name: Configure git user | |
run: | | |
git config --global user.name "github-actions[bot]" | |
git config --global user.email "github-actions[bot]@users.noreply.github.com" | |
- name: Deploy package | |
run: pkgdown::deploy_to_branch(new_process = FALSE, lazy=FALSE) | |
shell: Rscript {0} |