Add pandoc setup for r-lib #94
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| on: | |
| push: | |
| branches: master | |
| name: pkgdown | |
| jobs: | |
| pkgdown: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: 4.3.1 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get install --yes libcurl4-openssl-dev libharfbuzz-dev libfribidi-dev | |
| - name: Install XQuartz | |
| if: runner.os == 'macOS' | |
| run: brew cask install xquartz | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| shell: Rscript {0} | |
| - name: Cache R packages | |
| uses: actions/cache@v1 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ubuntu-r-4.0-4-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ubuntu-r-4.0-4- | |
| - name: Install dependencies | |
| run: | | |
| install.packages("BiocManager") | |
| BiocManager::install("IRanges") | |
| BiocManager::install("ggtree") | |
| install.packages("remotes") | |
| remotes::install_deps(dependencies = TRUE) | |
| install.packages('pkgdown') | |
| install.packages('devtools') | |
| remotes::install_dev("dplyr") | |
| install.packages("Hmisc") | |
| shell: Rscript {0} | |
| - name: Install package | |
| run: R CMD INSTALL . | |
| - name: Session Info | |
| run: | | |
| library(gggenomes) | |
| print(sessionInfo()) | |
| shell: Rscript {0} | |
| # - name: Setup upterm session | |
| # uses: lhotari/action-upterm@v1 | |
| - name: Configure git user | |
| run: | | |
| git config --global user.name "github-actions[bot]" | |
| git config --global user.email "github-actions[bot]@users.noreply.github.com" | |
| - name: Deploy package | |
| run: pkgdown::deploy_to_branch(new_process = FALSE, lazy=FALSE) | |
| shell: Rscript {0} |