Add mapper xml logic for genomicProfiles in study view filter

thehyve · Oct 24, 2023 · 5d496f4 · 5d496f4
1 parent f47d6f8
commit 5d496f4
Showing 1 changed file with 13 additions and 0 deletions.
diff --git a/...atis/src/main/resources/org/cbioportal/persistence/mybatiscolumnstore/StudyViewMapper.xml b/...atis/src/main/resources/org/cbioportal/persistence/mybatiscolumnstore/StudyViewMapper.xml
@@ -196,6 +196,19 @@
                     </include>
                 </foreach>
             </if>
+            <if test="studyViewFilter.genomicProfiles != null and !studyViewFilter.genomicProfiles.isEmpty()">
+                <foreach item="genomicProfileIds" collection="studyViewFilter.genomicProfiles" open="(" separator="," close=")">
+                    INTERSECT
+                    SELECT sample_unique_id
+                    FROM sample_in_data_profile
+                    WHERE genetic_profile_stable_id IN 
+                    <foreach item="genomicProfileId" collection="#{genomicProfileIds}" open="(" separator="," close=")">
+                        <foreach item="studyId" collection="studyViewFilter.studyIds" separator=",">
+                            concat(#{studyId}, '_', #{genomicProfileId});
+                        </foreach>
+                    </foreach>
+                </foreach>
+            </if>
             <!-- ... extend for other elements of the StudyViewFilter object -->
         </trim>
     </sql>