Skip to content

Commit

Permalink
Change finngen script to take significant window sumstats as input (#12)
Browse files Browse the repository at this point in the history
Use significant sumstats for finemapping 
(required by thehyve/otg-data-loading#201)
  • Loading branch information
ricardo-lourenco authored Mar 6, 2024
1 parent 4b3ec64 commit 31352d5
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion finngen/1_make_finngen_finemapping_manifest.py
Original file line number Diff line number Diff line change
Expand Up @@ -30,7 +30,7 @@ def main():
with open(out_manifest, 'w') as out_h:
for file in input_files:
out_record = {}
code = file.replace("study=", "")
code = file.replace(".parquet", "")
out_record['out_top_loci'] = output_path + code + '/top_loci.json.gz'
out_record['out_credset'] = output_path + code + '/credible_set.json.gz'
out_record['out_log'] = output_path + code + '/logfile.txt'
Expand Down

0 comments on commit 31352d5

Please sign in to comment.