Alquimia code and compilation with EMI

thorntonpe · Jun 5, 2024 · 981cf9e · 981cf9e
1 parent 1355c30
commit 981cf9e
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Showing 6 changed files with 3,312 additions and 23 deletions.
diff --git a/components/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90 b/components/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90
@@ -27,6 +27,10 @@ module ExternalModelConstants
   integer, public, parameter :: EM_ID_STUB                                       = 500
   integer, parameter, public :: EM_STUB_SOIL_HYDRO_STAGE                         = 501
   integer, parameter, public :: EM_STUB_SOIL_THERMAL_STAGE                       = 502
+
+  integer, public, parameter :: EM_ID_ALQUIMIA                                   = 600
+  integer, public, parameter :: EM_ALQUIMIA_SOLVE_STAGE                          = 601
+  integer, public, parameter :: EM_ALQUIMIA_COLDSTART_STAGE                      = 602
 
   ! ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
   ! IDs for variable sent from ALM to External Model

diff --git a/components/elm/src/external_models/emi/src/em/CMakeLists.txt b/components/elm/src/external_models/emi/src/em/CMakeLists.txt
@@ -4,7 +4,8 @@ add_subdirectory(fates)
 add_subdirectory(ptm)
 add_subdirectory(vsfm)
 add_subdirectory(stub)
+add_subdirectory(alquimia)
 
-set(EMI_LIBRARIES emi_em_base; emi_em_betr; emi_em_fates; emi_em_ptm; emi_em_vsfm; emi_em_stub; ${EMI_LIBRARIES} PARENT_SCOPE)
+set(EMI_LIBRARIES emi_em_base; emi_em_betr; emi_em_fates; emi_em_ptm; emi_em_vsfm; emi_em_stub; emi_em_alquimia; ${EMI_LIBRARIES} PARENT_SCOPE)
 
 
diff --git a/components/elm/src/external_models/emi/src/em/alquimia/CMakeLists.txt b/components/elm/src/external_models/emi/src/em/alquimia/CMakeLists.txt
@@ -0,0 +1,44 @@
+set(EMI_EM_ALQUIMIA_SOURCES
+  ExternalModelAlquimiaMod.F90
+)
+
+include_directories(${CMAKE_BINARY_DIR}/elm_stub/shr)
+include_directories(${CMAKE_BINARY_DIR}/elm_stub/utils)
+include_directories(${CMAKE_BINARY_DIR}/elm_stub/elm_types_stub)
+include_directories(${CMAKE_BINARY_DIR}/constants)
+include_directories(${CMAKE_BINARY_DIR}/emi_data_types)
+include_directories(${CMAKE_BINARY_DIR}/emi_data_definition)
+include_directories(${CMAKE_BINARY_DIR}/em/base)
+
+# Find PETSC stuff
+# Not necessary for Crunch?
+find_package(PETSc)
+if (NOT PETSC_FOUND)
+  message(FATAL_ERROR "PETSc was not found.")
+endif()
+include_directories(${PETSC_INCLUDES})
+
+# Include PETSc in the rpath.
+set(CMAKE_INSTALL_RPATH "${CMAKE_INSTALL_RPATH}:${PETSC_DIR}/${PETSC_ARCH}/lib")
+
+include_directories(${ALQUIMIA_DIR})
+link_libraries(${ALQUIMIA_DIR}/libalquimia.so ${PETSC_LIBRARIES}) 
+#link_libraries(${PETSC_DIR}/${PETSC_ARCH}/lib/libmpifort.dylib)) # This was necessary on Mac
+link_libraries($ENV{PFLOTRAN_DIR}/libpflotranchem.a)
+
+
+include(add_emi_library)
+add_emi_library(emi_em_alquimia ${EMI_EM_ALQUIMIA_SOURCES} )
+
+
+
+
+set(EMI_LIBRARIES emi_em_alquimia;${EMI_LIBRARIES} PARENT_SCOPE)
+set(EMI_LIBRARIES emi_em_alquimia;${EMI_LIBRARIES})
+
+
+if (NOT CMAKE_INSTALL_PREFIX STREQUAL "INSTALL_DISABLED")
+  install(TARGETS emi_em_alquimia DESTINATION lib)
+  file(GLOB HEADERS *.h)
+  install(FILES ${HEADERS} DESTINATION include/)
+endif()