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Transform midpoint argument in relevant scales (#5518)
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* transform midpoint

* add test

* check_transformation takes an argument name to report

* handle transformation in `mid_rescaler()`

* repeat less

* add news bullet

* redocument

* Better call wiring

* update trans -> transform
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teunbrand authored Dec 14, 2023
1 parent 9d1f81c commit a417cf4
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4 changes: 4 additions & 0 deletions NEWS.md
Original file line number Diff line number Diff line change
@@ -1,5 +1,9 @@
# ggplot2 (development version)

* (breaking) In the `scale_{colour/fill}_gradient2()` and
`scale_{colour/fill}_steps2()` functions, the `midpoint` argument is
transformed by the scale transformation (#3198).

* `guide_colourbar()` and `guide_coloursteps()` gain an `alpha` argument to
set the transparency of the bar (#5085).

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18 changes: 11 additions & 7 deletions R/scale-.R
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Expand Up @@ -609,7 +609,7 @@ check_breaks_labels <- function(breaks, labels, call = NULL) {
default_transform <- function(self, x) {
transformation <- self$get_transformation()
new_x <- transformation$transform(x)
check_transformation(x, new_x, self$transformation$name, self$call)
check_transformation(x, new_x, self$transformation$name, call = self$call)
new_x
}

Expand Down Expand Up @@ -1329,13 +1329,17 @@ scale_flip_position <- function(scale) {
invisible()
}

check_transformation <- function(x, transformed, name, call = NULL) {
if (any(is.finite(x) != is.finite(transformed))) {
cli::cli_warn(
"{.field {name}} transformation introduced infinite values.",
call = call
)
check_transformation <- function(x, transformed, name, arg = NULL, call = NULL) {
if (!any(is.finite(x) != is.finite(transformed))) {
return(invisible())
}
if (is.null(arg)) {
end <- "."
} else {
end <- paste0(" in {.arg {arg}}.")
}
msg <- paste0("{.field {name}} transformation introduced infinite values", end)
cli::cli_warn(msg, call = call)
}

trans_support_nbreaks <- function(trans) {
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30 changes: 20 additions & 10 deletions R/scale-gradient.R
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Expand Up @@ -90,37 +90,47 @@ scale_fill_gradient <- function(..., low = "#132B43", high = "#56B1F7", space =
}

#' @inheritParams scales::pal_div_gradient
#' @inheritParams continuous_scale
#' @param midpoint The midpoint (in data value) of the diverging scale.
#' Defaults to 0.
#' @rdname scale_gradient
#' @export
scale_colour_gradient2 <- function(..., low = muted("red"), mid = "white", high = muted("blue"),
midpoint = 0, space = "Lab", na.value = "grey50", guide = "colourbar",
midpoint = 0, space = "Lab", na.value = "grey50",
transform = "identity", guide = "colourbar",
aesthetics = "colour") {
continuous_scale(
aesthetics,
palette = pal_div_gradient(low, mid, high, space),
na.value = na.value, guide = guide, ...,
rescaler = mid_rescaler(mid = midpoint)
palette = div_gradient_pal(low, mid, high, space),
na.value = na.value, transform = transform, guide = guide, ...,
rescaler = mid_rescaler(mid = midpoint, transform = transform)
)
}

#' @rdname scale_gradient
#' @export
scale_fill_gradient2 <- function(..., low = muted("red"), mid = "white", high = muted("blue"),
midpoint = 0, space = "Lab", na.value = "grey50", guide = "colourbar",
midpoint = 0, space = "Lab", na.value = "grey50",
transform = "identity", guide = "colourbar",
aesthetics = "fill") {
continuous_scale(
aesthetics,
palette = pal_div_gradient(low, mid, high, space),
na.value = na.value, guide = guide, ...,
rescaler = mid_rescaler(mid = midpoint)
palette = div_gradient_pal(low, mid, high, space),
na.value = na.value, transform = transform, guide = guide, ...,
rescaler = mid_rescaler(mid = midpoint, transform = transform)
)
}

mid_rescaler <- function(mid) {
mid_rescaler <- function(mid, transform = "identity",
arg = caller_arg(mid), call = caller_env()) {
transform <- as.trans(transform)
trans_mid <- transform$transform(mid)
check_transformation(
mid, trans_mid, transform$name,
arg = arg, call = call
)
function(x, to = c(0, 1), from = range(x, na.rm = TRUE)) {
rescale_mid(x, to, from, mid)
rescale_mid(x, to, from, trans_mid)
}
}

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17 changes: 11 additions & 6 deletions R/scale-steps.R
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Expand Up @@ -52,10 +52,13 @@ scale_colour_steps <- function(..., low = "#132B43", high = "#56B1F7", space = "
#' @rdname scale_steps
#' @export
scale_colour_steps2 <- function(..., low = muted("red"), mid = "white", high = muted("blue"),
midpoint = 0, space = "Lab", na.value = "grey50", guide = "coloursteps",
midpoint = 0, space = "Lab", na.value = "grey50",
transform = "identity", guide = "coloursteps",
aesthetics = "colour") {
binned_scale(aesthetics, palette = pal_div_gradient(low, mid, high, space),
na.value = na.value, guide = guide, rescaler = mid_rescaler(mid = midpoint), ...)
binned_scale(aesthetics, palette = div_gradient_pal(low, mid, high, space),
na.value = na.value, transform = transform, guide = guide,
rescaler = mid_rescaler(mid = midpoint, transform = transform),
...)
}
#' @rdname scale_steps
#' @export
Expand All @@ -75,10 +78,12 @@ scale_fill_steps <- function(..., low = "#132B43", high = "#56B1F7", space = "La
#' @rdname scale_steps
#' @export
scale_fill_steps2 <- function(..., low = muted("red"), mid = "white", high = muted("blue"),
midpoint = 0, space = "Lab", na.value = "grey50", guide = "coloursteps",
midpoint = 0, space = "Lab", na.value = "grey50",
transform = "identity", guide = "coloursteps",
aesthetics = "fill") {
binned_scale(aesthetics, palette = pal_div_gradient(low, mid, high, space),
na.value = na.value, guide = guide, rescaler = mid_rescaler(mid = midpoint), ...)
binned_scale(aesthetics, palette = div_gradient_pal(low, mid, high, space),
na.value = na.value, transform = transform, guide = guide,
rescaler = mid_rescaler(mid = midpoint, transform = transform), ...)
}
#' @rdname scale_steps
#' @export
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27 changes: 15 additions & 12 deletions man/scale_gradient.Rd

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27 changes: 15 additions & 12 deletions man/scale_steps.Rd

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16 changes: 16 additions & 0 deletions tests/testthat/test-scale-gradient.R
Original file line number Diff line number Diff line change
Expand Up @@ -9,3 +9,19 @@ test_that("points outside the limits are plotted as NA", {
correct_fill <- c("#B26D65", "#DCB4AF", "orange")
expect_equal(layer_data(p)$fill, correct_fill)
})

test_that("midpoints are transformed", {

scale <- scale_colour_gradient2(midpoint = 1, trans = "identity")
scale$train(c(0, 3))
expect_equal(scale$rescale(c(0, 3)), c(0.25, 1))

scale <- scale_colour_gradient2(midpoint = 10, trans = "log10")
scale$train(scale$transform(c(1, 1000)))
ans <- scale$rescale(c(0, 3), c(0.25, 1))

expect_warning(
scale_colour_gradient2(midpoint = 0, transform = "log10"),
"introduced infinite values"
)
})

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