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Update revdep checks
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lionel- committed Nov 17, 2020
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8 changes: 4 additions & 4 deletions revdep/README.md
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@@ -1,6 +1,6 @@
# Revdeps

## Failed to check (26)
## Failed to check (27)

|package |version |error |warning |note |
|:--------------------------|:-------|:------|:-------|:----|
Expand All @@ -21,6 +21,7 @@
|NA |? | | | |
|NA |? | | | |
|precautionary |0.1-5 |1 | | |
|psychonetrics |? | | | |
|NA |? | | | |
|RichR |? | | | |
|[ripe](failures.md#ripe) |0.1.0 |__+1__ | | |
Expand All @@ -31,14 +32,13 @@
|spectralAnalysis |? | | | |
|[torch](failures.md#torch) |0.1.1 |__+1__ | |-1 |

## New problems (6)
## New problems (5)

|package |version |error |warning |note |
|:----------------------------------------|:-------|:------|:-------|:----|
|[datamaps](problems.md#datamaps) |0.0.3 |__+1__ | | |
|[jqr](problems.md#jqr) |1.1.0 |__+2__ | | |
|[rcrtan](problems.md#rcrtan) |0.1.1 |__+1__ | | |
|[reproducible](problems.md#reproducible) |1.2.1 |__+2__ | | |
|[sketch](problems.md#sketch) |1.0.3 |__+2__ | | |
|[TCIU](problems.md#tciu) |1.1.0 | |__+1__ |1 |
|[tidytidbits](problems.md#tidytidbits) |0.2.2 |__+1__ | | |

107 changes: 92 additions & 15 deletions revdep/failures.md
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Expand Up @@ -73,7 +73,7 @@ Run `cloud_details(, "NA")` for more info
* Version: 1.3.4
* Source code: https://github.com/cran/CB2
* Date/Publication: 2020-07-24 09:42:24 UTC
* Number of recursive dependencies: 106
* Number of recursive dependencies: 105

Run `cloud_details(, "CB2")` for more info

Expand Down Expand Up @@ -144,7 +144,7 @@ Status: 1 ERROR
* URL: https://github.com/zedoul/cbar
* BugReports: https://github.com/zedoul/cbar/issues
* Date/Publication: 2017-10-24 13:20:22 UTC
* Number of recursive dependencies: 67
* Number of recursive dependencies: 66

Run `cloud_details(, "cbar")` for more info

Expand Down Expand Up @@ -283,7 +283,7 @@ Status: 1 ERROR
* Source code: https://github.com/cran/dimRed
* URL: https://github.com/gdkrmr/dimRed
* Date/Publication: 2019-05-08 08:10:07 UTC
* Number of recursive dependencies: 140
* Number of recursive dependencies: 139

Run `cloud_details(, "dimRed")` for more info

Expand Down Expand Up @@ -455,7 +455,7 @@ Run `cloud_details(, "NA")` for more info
* Version: 0.0.4
* Source code: https://github.com/cran/ggmsa
* Date/Publication: 2020-05-28 10:50:10 UTC
* Number of recursive dependencies: 82
* Number of recursive dependencies: 81

Run `cloud_details(, "ggmsa")` for more info

Expand Down Expand Up @@ -536,7 +536,7 @@ Status: 1 ERROR
* URL: https://github.com/ropensci/jstor, https://docs.ropensci.org/jstor
* BugReports: https://github.com/ropensci/jstor/issues
* Date/Publication: 2020-06-04 04:50:03 UTC
* Number of recursive dependencies: 74
* Number of recursive dependencies: 73

Run `cloud_details(, "jstor")` for more info

Expand Down Expand Up @@ -624,7 +624,7 @@ Run `cloud_details(, "jstor")` for more info
* URL: https://symbolixau.github.io/mapdeck/articles/mapdeck.html
* BugReports: https://github.com/SymbolixAU/mapdeck/issues
* Date/Publication: 2020-09-04 05:22:10 UTC
* Number of recursive dependencies: 75
* Number of recursive dependencies: 83

Run `cloud_details(, "mapdeck")` for more info

Expand All @@ -649,8 +649,8 @@ Run `cloud_details(, "mapdeck")` for more info
** libs
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -DSTRICT_R_HEADERS -DBOOST_NO_AUTO_PTR -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/colourvalues/include" -I"/usr/local/lib/R/site-library/geojsonsf/include" -I"/usr/local/lib/R/site-library/geometries/include" -I"/usr/local/lib/R/site-library/jsonify/include" -I"/usr/local/lib/R/site-library/rapidjsonr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/sfheaders/include" -I"/usr/local/lib/R/site-library/spatialwidget/include" -I../inst/include -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -DSTRICT_R_HEADERS -DBOOST_NO_AUTO_PTR -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/colourvalues/include" -I"/usr/local/lib/R/site-library/geojsonsf/include" -I"/usr/local/lib/R/site-library/geometries/include" -I"/usr/local/lib/R/site-library/jsonify/include" -I"/usr/local/lib/R/site-library/rapidjsonr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/sfheaders/include" -I"/usr/local/lib/R/site-library/spatialwidget/include" -I../inst/include -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c aggregate.cpp -o aggregate.o
/tmp/ccqSUMiy.s: Assembler messages:
/tmp/ccqSUMiy.s: Fatal error: can't close aggregate.o: No space left on device
/tmp/ccZjU7ZO.s: Assembler messages:
/tmp/ccZjU7ZO.s: Fatal error: can't close aggregate.o: No space left on device
make: *** [/usr/lib/R/etc/Makeconf:177: aggregate.o] Error 1
ERROR: compilation failed for package ‘mapdeck’
* removing ‘/tmp/workdir/mapdeck/new/mapdeck.Rcheck/mapdeck’
Expand All @@ -670,8 +670,8 @@ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -DSTRICT_R_HEADERS -DBOOST_NO
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -DSTRICT_R_HEADERS -DBOOST_NO_AUTO_PTR -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/colourvalues/include" -I"/usr/local/lib/R/site-library/geojsonsf/include" -I"/usr/local/lib/R/site-library/geometries/include" -I"/usr/local/lib/R/site-library/jsonify/include" -I"/usr/local/lib/R/site-library/rapidjsonr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/sfheaders/include" -I"/usr/local/lib/R/site-library/spatialwidget/include" -I../inst/include -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c od.cpp -o od.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -DSTRICT_R_HEADERS -DBOOST_NO_AUTO_PTR -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/colourvalues/include" -I"/usr/local/lib/R/site-library/geojsonsf/include" -I"/usr/local/lib/R/site-library/geometries/include" -I"/usr/local/lib/R/site-library/jsonify/include" -I"/usr/local/lib/R/site-library/rapidjsonr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/sfheaders/include" -I"/usr/local/lib/R/site-library/spatialwidget/include" -I../inst/include -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c path.cpp -o path.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -DSTRICT_R_HEADERS -DBOOST_NO_AUTO_PTR -I"/usr/local/lib/R/site-library/BH/include" -I"/usr/local/lib/R/site-library/colourvalues/include" -I"/usr/local/lib/R/site-library/geojsonsf/include" -I"/usr/local/lib/R/site-library/geometries/include" -I"/usr/local/lib/R/site-library/jsonify/include" -I"/usr/local/lib/R/site-library/rapidjsonr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/sfheaders/include" -I"/usr/local/lib/R/site-library/spatialwidget/include" -I../inst/include -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c point.cpp -o point.o
/tmp/ccj1hTMJ.s: Assembler messages:
/tmp/ccj1hTMJ.s: Fatal error: can't close point.o: No space left on device
/tmp/ccJov3g3.s: Assembler messages:
/tmp/ccJov3g3.s: Fatal error: can't close point.o: No space left on device
make: *** [/usr/lib/R/etc/Makeconf:177: point.o] Error 1
ERROR: compilation failed for package ‘mapdeck’
* removing ‘/tmp/workdir/mapdeck/old/mapdeck.Rcheck/mapdeck’
Expand Down Expand Up @@ -720,7 +720,7 @@ Run `cloud_details(, "NA")` for more info
* URL: https://github.com/ropensci/osmplotr
* BugReports: https://github.com/ropensci/osmplotr/issues
* Date/Publication: 2018-12-19 13:40:03 UTC
* Number of recursive dependencies: 120
* Number of recursive dependencies: 119

Run `cloud_details(, "osmplotr")` for more info

Expand Down Expand Up @@ -943,6 +943,83 @@ Execution halted
ERROR: lazy loading failed for package ‘precautionary’
* removing ‘/tmp/workdir/precautionary/old/precautionary.Rcheck/precautionary’
```
# psychonetrics

<details>

* Version: 0.8
* Source code: https://github.com/cran/psychonetrics
* URL: http://psychonetrics.org/
* BugReports: https://github.com/SachaEpskamp/psychonetrics/issues
* Date/Publication: 2020-10-26 21:50:03 UTC
* Number of recursive dependencies: 159

Run `cloud_details(, "psychonetrics")` for more info

</details>

## Error before installation

### Devel

```
* using log directory ‘/tmp/workdir/psychonetrics/new/psychonetrics.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘psychonetrics/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘psychonetrics’ version ‘0.8’
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package suggested but not available: ‘metaSEM’
The suggested packages are required for a complete check.
Checking can be attempted without them by setting the environment
variable _R_CHECK_FORCE_SUGGESTS_ to a false value.
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
```
### CRAN

```
* using log directory ‘/tmp/workdir/psychonetrics/old/psychonetrics.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘psychonetrics/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘psychonetrics’ version ‘0.8’
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package suggested but not available: ‘metaSEM’
The suggested packages are required for a complete check.
Checking can be attempted without them by setting the environment
variable _R_CHECK_FORCE_SUGGESTS_ to a false value.
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
```
# NA

Expand Down Expand Up @@ -1056,7 +1133,7 @@ Status: 1 ERROR
* URL: https://github.com/yonicd/ripe
* BugReports: https://github.com/yonicd/ripe/issues
* Date/Publication: 2019-12-06 10:10:02 UTC
* Number of recursive dependencies: 59
* Number of recursive dependencies: 58

Run `cloud_details(, "ripe")` for more info

Expand Down Expand Up @@ -1253,7 +1330,7 @@ Status: 1 ERROR
* Source code: https://github.com/cran/SMITIDvisu
* URL: https://informatique-mia.inrae.fr/biosp/anr-smitid-project/, https://gitlab.paca.inrae.fr/SMITID/visu/
* Date/Publication: 2020-11-05 11:10:02 UTC
* Number of recursive dependencies: 85
* Number of recursive dependencies: 84

Run `cloud_details(, "SMITIDvisu")` for more info

Expand Down Expand Up @@ -1331,7 +1408,7 @@ Status: 1 ERROR
* Source code: https://github.com/cran/spectralAnalysis
* URL: http://www.openanalytics.eu
* Date/Publication: 2018-06-12 14:30:39 UTC
* Number of recursive dependencies: 118
* Number of recursive dependencies: 117

Run `cloud_details(, "spectralAnalysis")` for more info

Expand Down Expand Up @@ -1400,7 +1477,7 @@ Status: 1 ERROR
* URL: https://torch.mlverse.org/docs, https://github.com/mlverse/torch
* BugReports: https://github.com/mlverse/torch/issues
* Date/Publication: 2020-10-20 21:10:02 UTC
* Number of recursive dependencies: 59
* Number of recursive dependencies: 58

Run `cloud_details(, "torch")` for more info

Expand Down
113 changes: 21 additions & 92 deletions revdep/problems.md
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Expand Up @@ -41,62 +41,6 @@ Run `cloud_details(, "datamaps")` for more info
Execution halted
```

# jqr

<details>

* Version: 1.1.0
* Source code: https://github.com/cran/jqr
* URL: https://github.com/ropensci/jqr
* BugReports: https://github.com/ropensci/jqr/issues
* Date/Publication: 2018-10-22 22:20:55 UTC
* Number of recursive dependencies: 54

Run `cloud_details(, "jqr")` for more info

</details>

## Newly broken

* checking examples ... ERROR
```
Running examples in ‘jqr-Ex.R’ failed
The error most likely occurred in:
> ### Name: combine
> ### Title: Combine json pieces
> ### Aliases: combine
>
> ### ** Examples
>
> x <- '{"foo": 5, "bar": 7}' %>% select(a = .foo)
> combine(x)
Error: Must be class jqson
Execution halted
```

* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
● empty test (1)
══ testthat results ═══════════════════════════════════════════════════════════
FAILURE (test-dsl.R:132:3): maths
FAILURE (test-dsl.R:177:3): construct objects
FAILURE (test-dsl.R:178:3): construct objects
FAILURE (test-dsl.R:187:3): paths
FAILURE (test-dsl.R:190:3): paths
FAILURE (test-dsl.R:192:3): paths
FAILURE (test-dsl.R:202:3): recurse
FAILURE (test-dsl.R:206:3): recurse
[ FAIL 8 | WARN 0 | SKIP 1 | PASS 114 ]
Error: Test failures
Execution halted
```

# rcrtan

<details>
Expand Down Expand Up @@ -140,7 +84,7 @@ Run `cloud_details(, "rcrtan")` for more info
* URL: https://reproducible.predictiveecology.org, https://github.com/PredictiveEcology/reproducible
* BugReports: https://github.com/PredictiveEcology/reproducible/issues
* Date/Publication: 2020-08-18 07:20:36 UTC
* Number of recursive dependencies: 106
* Number of recursive dependencies: 105

Run `cloud_details(, "reproducible")` for more info

Expand Down Expand Up @@ -205,7 +149,7 @@ Run `cloud_details(, "reproducible")` for more info
* URL: https://github.com/yonicd/ripe
* BugReports: https://github.com/yonicd/ripe/issues
* Date/Publication: 2019-12-06 10:10:02 UTC
* Number of recursive dependencies: 59
* Number of recursive dependencies: 58

Run `cloud_details(, "ripe")` for more info

Expand Down Expand Up @@ -257,52 +201,37 @@ ERROR: lazy loading failed for package ‘ripe’
* DONE (ripe)
```
# sketch
# TCIU

<details>

* Version: 1.0.3
* Source code: https://github.com/cran/sketch
* BugReports: https://github.com/kcf-jackson/sketch
* Date/Publication: 2020-10-08 07:40:03 UTC
* Number of recursive dependencies: 66
* Version: 1.1.0
* Source code: https://github.com/cran/TCIU
* URL: https://github.com/SOCR/TCIU, https://spacekime.org, https://tciu.predictive.space
* BugReports: https://github.com/SOCR/TCIU/issues
* Date/Publication: 2020-09-18 12:00:32 UTC
* Number of recursive dependencies: 189

Run `cloud_details(, "sketch")` for more info
Run `cloud_details(, "TCIU")` for more info

</details>

## Newly broken

* checking examples ... ERROR
* checking whether package ‘TCIU’ can be installed ... WARNING
```
Running examples in ‘sketch-Ex.R’ failed
The error most likely occurred in:
> ### Name: compile_r
> ### Title: Compile an R file into a JavaScript file
> ### Aliases: compile_r
>
> ### ** Examples
>
> file <- system.file("test_files/test_source.R", package = "sketch")
> readLines(file)
[1] "console::log(\"'test_source.R' runs successfully.\")"
> compile_r(input = file)
Error: C stack usage 7969652 is too close to the limit
Execution halted
Found the following significant warnings:
Warning: loading Rplot failed
See ‘/tmp/workdir/TCIU/new/TCIU.Rcheck/00install.out’ for details.
```

* checking tests ... ERROR
## In both

* checking installed package size ... NOTE
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(sketch)
>
> test_check("sketch")
Error: C stack usage 7970324 is too close to the limit
Execution halted
installed size is 12.3Mb
sub-directories of 1Mb or more:
doc 11.2Mb
```

# tidytidbits
Expand Down Expand Up @@ -355,7 +284,7 @@ Run `cloud_details(, "tidytidbits")` for more info
* URL: https://torch.mlverse.org/docs, https://github.com/mlverse/torch
* BugReports: https://github.com/mlverse/torch/issues
* Date/Publication: 2020-10-20 21:10:02 UTC
* Number of recursive dependencies: 59
* Number of recursive dependencies: 58

Run `cloud_details(, "torch")` for more info

Expand Down

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