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Tyler Chafin committed Jul 16, 2019
1 parent 687eda3 commit 0da97bc
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions mrbait/mrbait.py
Original file line number Diff line number Diff line change
Expand Up @@ -65,14 +65,14 @@ def main():
print("\t\tMasking consensus sequences using the DUST algorithm in VSEARCH...", end="")
masked = core.fastxMaskLoci(conn, params, m.getPassedLoci(conn))
m.updateLociMask(conn, masked)
print(" Done!\n")

print(" Done!")

#Pre-filters: Length, alignment depth
print("\t\tFiltering loci...",end="")
m.filterLoci(conn, params.minlen, params.cov, params.max_ambig, params.max_mask)
#print(m.getLoci(conn))
print(" Done!")
print(" Done!\n")

passedLoci = m.getNumPassedLoci(conn)
if passedLoci <= 0:
sys.exit("\nProgram killed: No loci passed filtering.\n")
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