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  1. kbo kbo Public

    Spectral Burrows-Wheeler transform accelerated local alignment search.

    Rust 4

  2. tigz tigz Public

    Parallel gzip decompression and compression using libdeflate and rapidgzip.

    C++ 5

  3. bxzstr bxzstr Public

    A C++ header-only ZLib / libBZ2 / libLZMA / Zstandard wrapper.

    C++ 52 13

  4. PROBIC/mSWEEP PROBIC/mSWEEP Public

    mSWEEP High-resolution sweep metagenomics using fast probabilistic inference

    C++ 13 2

  5. PROBIC/mGEMS PROBIC/mGEMS Public

    mGEMS Genomic epidemiology with mixed samples

    C++ 16 1

  6. algbio/themisto algbio/themisto Public

    Space-efficient pseudoalignment with a colored de Bruijn graph

    C++ 52 4